Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b14
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 40 2e-04
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.096
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 31 0.13
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 0.29
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.39
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 29 0.39
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 28 0.90
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 1.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 1.2
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 2.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 2.7
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 2.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 2.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 2.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 2.7
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 3.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 3.6
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 4.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 4.8
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 6.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 6.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 8.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 8.4
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +2
Query: 113 VHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSL--ADDSEKIPYL- 283
V + EDQ+ +N+F+ L+++ + ++K + ++++ +A E L DD + IP L
Sbjct: 4 VPVLAEDQRNLNEFSVLHSRKAIQELDIKNLKTQIEDIVDAKNECELLDEDDGDDIPALK 63
Query: 284 IGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKITNE*LESTLVWK 439
+G+ F +L + L LE+++ ++ L E+ + + L+S L K
Sbjct: 64 VGDAFFQVSLPVLLDQLEQSEESLEKQVDVLRSSMEKDETRIQELKSMLYSK 115
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 31.1 bits (67), Expect = 0.096
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 86 KGTFQPDSDVHISYEDQQKINKFAR--LNAKVDDYKDELKVKQNDVKNLEEAVEELSLAD 259
+G F+P+ Y+ QK + L A ++ YK +L+ + KN+ + V ++ +
Sbjct: 827 EGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPS 886
Query: 260 DSEKIP 277
D K+P
Sbjct: 887 D-VKVP 891
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 30.7 bits (66), Expect = 0.13
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +2
Query: 203 KQNDVKNLEEAVEELS--LADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDL 376
K+N+ KN+ + +E LS L + +++ ++ G+ +I L+ L AK ++H+I+ L
Sbjct: 106 KKNEAKNMYKEIERLSVILGESVDEVNFVNGDFEDIS--DIKLEQL-SAKLNELHQIYRL 162
Query: 377 -EEKCEELKITNE*LESTLVWKI 442
+EK E+K + L+ +L K+
Sbjct: 163 RKEKNIEIKEELKKLQDSLSIKL 185
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 29.5 bits (63), Expect = 0.29
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +2
Query: 59 LIVNMSTTAKGTFQPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAV 238
++ N T K +F S+V +SYE + N L+ V+D + +L+ K+ +L
Sbjct: 540 ILANQLMTLKSSF---SEV-MSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRSVR 595
Query: 239 EELSLADDSEKIPYLIGEI-FICQNLEI---TLKNLEEAKAKKIHEIHDLEEKCEELKIT 406
E L + +I + I + +N +I TLK+ A I EI LE + EE + T
Sbjct: 596 ERLEI-----RISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKT 650
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 104 DSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE 244
+ +V YE +Q N+ L+ ++D +D L K++++ L+ +EE
Sbjct: 278 NKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEE 324
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 29.1 bits (62), Expect = 0.39
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 305 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKITNE*LESTLVWKI 442
QNL TLKN+E+A+ + I D+++ E++ E + + W I
Sbjct: 117 QNLSATLKNIEQARPTEEITIEDMKQAVPEIEKIVETMVTKGKWVI 162
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 0.90
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 206 QNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQ-NLEITLKNLEEAKAKKIHEIHDLEE 382
Q+ + +LE+ V++ + ++ P + + + LE K +EEAKAK+ ++ DL +
Sbjct: 4 QDSIPSLEQLVQQKRVKEEKAARPKFLSKAERARLALERRQKEVEEAKAKQNDKLLDLRK 63
Query: 383 K 385
+
Sbjct: 64 R 64
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 173 VDDYKDEL-KVKQNDVKNLEEAVEELSLADDSEK 271
+D Y D KVK KN E+ V +L++ D SEK
Sbjct: 325 LDRYGDGTSKVKDKKAKNNEKEVPDLAILDKSEK 358
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 98 QPDSDVHISYEDQQKINKFARLNAKVDDYKDELKV-----KQNDVKNLEEAVEELSLADD 262
+PDS+ + ++ ++ + RL +VD++ E+K K N + EEA ++ D
Sbjct: 1166 KPDSEARLQAIERSELLQKKRLLQRVDEFSKEVKTFVENEKLNKIGGAEEADRIRTIQD- 1224
Query: 263 SEKIPYLIGEIFI 301
EK+ ++ + F+
Sbjct: 1225 -EKVRKILWDDFV 1236
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 2.1
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 176 DDYKDELKVKQNDV-KNLEEAVEELSLADDSEKIPYLIGEIFICQN-LEITLKNLEEAKA 349
D K + K+ N V +N +A + L ++ + L EI C+ LE + + +AKA
Sbjct: 56 DSNKSDSKLLSNQVSQNDNDARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEVAKAKA 115
Query: 350 KKIHEIHDLEEKCEELK 400
K + + LEE +E K
Sbjct: 116 KAVEDQLALEEADKEAK 132
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 173 VDDYKDELKVKQNDVKNLEEAVEELSLA 256
++D ++ V QND K + A ELSL+
Sbjct: 343 INDLDHQISVMQNDEKRINNAKTELSLS 370
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/106 (22%), Positives = 43/106 (40%)
Frame = +2
Query: 74 STTAKGTFQPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSL 253
S A P + H S + + N V D L V + + A E+L
Sbjct: 160 SNEAADVVFPHEEAHFSNHNPKPNNGSPLQKQVVADLPFPLPVSDEEQLDWIRANEDLVH 219
Query: 254 ADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCE 391
+ D ++ L ++ + + L L+ +++ +HEI+ LE CE
Sbjct: 220 SQDIDEA--LEWAEYVLRFTQSHLPYLQTYESENLHEINYLESMCE 263
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 2.7
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 QKINKFAR-LNAKVDDYKDELKVKQN--DVKNLEEAVE-ELSLADDSEKIPYLIGEIFIC 304
+ IN R L+ + K L+V Q D+ +L+E + D +KI L +I +
Sbjct: 1234 ETINVSVRDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVA 1293
Query: 305 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELK 400
+++ K+L + KI+E + E+K EEL+
Sbjct: 1294 RDVAEDTKSLGKELQNKINEKNLAEQKVEELQ 1325
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 2.7
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Frame = +2
Query: 137 QKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE----LSLADD---SEKIPYLIGEI 295
Q + + +A++ + K ELK +QN +E + E L+ ++ +E+ L E
Sbjct: 821 QNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEE 880
Query: 296 FICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKITNE*LESTLVWK 439
+ + E L N+E++ ++ + +L+ + LK N LES L+ K
Sbjct: 881 ILRRTQE-RLANIEDSFSETKQQNENLQRESASLKQINNELESELLEK 927
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 158 RLNAKVDDYKDELKVKQNDVKNLEEAVEELS 250
R AK+ Y+ + + QN + LEE +E L+
Sbjct: 1673 RSKAKISVYEKKTRDLQNKITQLEETIENLN 1703
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 272 IPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEEL 397
IP+L E+ L LK + + + E++D+ +KC+ L
Sbjct: 301 IPFLNYELITSTKLAKVLKRIAFLEHLENDELYDIRQKCKNL 342
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +2
Query: 143 INKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEIT 322
+N ++ KVD ++ + + +L++ E +LA D+E + ++I E +
Sbjct: 641 LNLYSVFEGKVDSLQELYNAFKLQLTSLKQKGEYATLAKDAEAVQHIIEERDYALAEKAD 700
Query: 323 LKNLEEAKAKK----IHEIHDLEEKCEELK 400
L L E + ++ +++ + +C EL+
Sbjct: 701 LLKLSENRKEQCKILTQKLYTIVFRCNELQ 730
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 167 AKVDDYKDELKVKQNDVKNLEEAVEEL 247
AK+ +++ ++K+K DV ++EA EE+
Sbjct: 282 AKMFNHETDIKIKFADVAGVDEAKEEI 308
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 125 YEDQ-QKIN-KFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEK 271
+EDQ +K+N + + N+ + KDEL+ LEE + L A E+
Sbjct: 128 FEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQ 178
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 6.3
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 128 EDQQKIN-KFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFIC 304
E+QQ++ + RL A+ + E + + + LEE EEL + + P L EI
Sbjct: 153 EEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELR-NECLKHDPQLDAEI--- 208
Query: 305 QNLEITLKNLEEAKAKKIHE 364
+ L+ T + +E K++ +
Sbjct: 209 RTLQDTFEEVERTLTKQVSD 228
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 6.3
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 68 NMSTTAKGTFQPDSDVHISYEDQQKIN----KFARLNAKVDDYKDELKVKQNDVKNLEEA 235
N G+ D ++ E Q+KI+ KF +K+ D + K+N+ L+ A
Sbjct: 37 NKQLRGLGSSLTDGAKSVAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNA 96
Query: 236 VEELSLADDSEKI 274
+ ELS A+ S +
Sbjct: 97 IYELSQAEGSTNV 109
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +2
Query: 146 NKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLAD 259
N+F + A+VD+ ++EL+ +++++ + +EE AD
Sbjct: 144 NQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGAD 181
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 206 QNDVKNLEEAVEELSLADDSEKI 274
++ V+ LE +EELS ADD + +
Sbjct: 157 KDKVQKLEAEIEELSTADDVDDV 179
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +2
Query: 176 DDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFI 301
+DY E + D ++E + E DD + GE+++
Sbjct: 937 EDYVSESTERTPDASEIDEHISEHEENDDESSSVFSTGEVWV 978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,948
Number of Sequences: 5004
Number of extensions: 24879
Number of successful extensions: 110
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -