Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b14
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08780.1 68414.m00977 prefoldin, putative similar to Swiss-Pr... 66 9e-12
At1g22060.1 68414.m02759 expressed protein 35 0.026
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 35 0.035
At2g18876.1 68415.m02201 expressed protein 33 0.081
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 32 0.19
At1g32050.1 68414.m03943 secretory carrier membrane protein (SCA... 30 0.75
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.00
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain... 30 1.00
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 30 1.00
At2g18876.2 68415.m02202 expressed protein 30 1.00
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai... 29 1.3
At1g60870.1 68414.m06852 expressed protein 29 1.3
At1g02330.1 68414.m00178 expressed protein contains similarity t... 29 1.3
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si... 29 1.7
At2g34580.1 68415.m04248 hypothetical protein 29 2.3
At1g31380.1 68414.m03841 hypothetical protein 29 2.3
At5g53220.1 68418.m06616 expressed protein ; expression support... 28 3.0
At2g28360.1 68415.m03447 SIT4 phosphatase-associated family prot... 28 3.0
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ... 28 4.0
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 27 5.3
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit... 27 7.0
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 27 7.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 7.0
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 27 7.0
At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 27 9.3
>At1g08780.1 68414.m00977 prefoldin, putative similar to
Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1)
[Homo sapiens]
Length = 129
Score = 66.5 bits (155), Expect = 9e-12
Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Frame = +2
Query: 107 SDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLI 286
S++ +++EDQQ IN F+RLN +V D D++K + +NLE+A EL LAD+ E + + I
Sbjct: 10 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADE-EMVRFQI 68
Query: 287 GEIFI---CQNLEITLKNLEEAKAKKIHEIHDLEE 382
GE+F ++E ++ ++EA K + ++ +E
Sbjct: 69 GEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKE 103
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 35.1 bits (77), Expect = 0.026
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 137 QKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLE 316
Q +N +L A +D K ELK+++N NL+ VEEL+ D + +L+ E F Q +
Sbjct: 1257 QHMNANIKLLADLDSLKSELKIERNLRNNLDRRVEELTSELDEK---HLLLENFDLQKSQ 1313
Query: 317 ITL--KNLEEAKAKK 355
+ L K + E +++K
Sbjct: 1314 VELLEKMVAELESEK 1328
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 34.7 bits (76), Expect = 0.035
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +2
Query: 104 DSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADD----SEK 271
D+ +H+ ++ KI K ++ + D + E+ + +K L +A E S+ + S+K
Sbjct: 247 DNSIHVV--EEMKI-KMTGIDEQTDKTQGEISELEKQIKALTQA-REASMGGEVKALSDK 302
Query: 272 IPYLIGEIFI----CQNLEITLKNLEEAKAKKIHEIHDLEEKCEE 394
+ L E+ N+E TL+ E+ K +H I DL++ EE
Sbjct: 303 VDSLSNEVTRELSKLTNMEDTLQGEEKNAEKMVHNIEDLKKSVEE 347
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 33.5 bits (73), Expect = 0.081
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Frame = +2
Query: 98 QPDSDVHISYEDQQK--INKFARLNAKVDDYKDELKVKQNDVKNL--EEAVEELSLADDS 265
Q D + S DQ++ ++ ARL AKV+ + +L+ K+ ++ ++ EA +L +
Sbjct: 79 QRDVEFRESANDQRQRLLSDMARLEAKVERLETQLQAKERELGSVTRTEAKNTAALKTQN 138
Query: 266 EKIPYLIGEI--FICQNLEITLKNLEEAKAKKIHEIHDLEEKCEEL 397
EK+ E + N ++ + L E K KK E L+E+ ++
Sbjct: 139 EKLQKERDEFQRMVIANQQVKTQQLHETK-KKEKEYIKLQERLNQV 183
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 32.3 bits (70), Expect = 0.19
Identities = 29/108 (26%), Positives = 52/108 (48%)
Frame = +2
Query: 107 SDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLI 286
S+ + +Q KF R+N K D + +LK + K ++ + LSL EK L
Sbjct: 421 SEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSL----EKQQLLS 476
Query: 287 GEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKITNE*LESTL 430
+ ++LE + +E+ +A+ + +EE+C+ L+I E E L
Sbjct: 477 DK----ESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYL 520
>At1g32050.1 68414.m03943 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 264
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 143 INKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIP 277
+N ++ K+ D++ EL+ K+ D+K EEA+ + + D + P
Sbjct: 51 MNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWP 95
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +2
Query: 152 FARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKN 331
+ L D K K QND +++++ +ELS + + K ++ C +L +
Sbjct: 135 YTDLKRSPDLTKSPTKPPQNDPEDIQKLRKELSASMAARKSLQMM-----CSSLGKEKEI 189
Query: 332 LEEAKAKKIHEIHDLEEKCEELKITNE 412
+ ++K HE++++EE + + NE
Sbjct: 190 MALELSRKAHELNEMEELVSDFRAQNE 216
>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 343
Score = 29.9 bits (64), Expect = 1.00
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +2
Query: 215 VKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHE------IHDL 376
+K + ++ +ELS D S+ L NL + LEE KK +E +H++
Sbjct: 246 IKTMCQSTQELSKDDLSDADAALAYLTDAGLNLNWLEEKLEEVSEKKENEEAGETRVHEI 305
Query: 377 EEKCEELKITNE*LESTL 430
EE+ +ELK+ LE+ L
Sbjct: 306 EEELKELKLKCSNLEAQL 323
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 29.9 bits (64), Expect = 1.00
Identities = 26/101 (25%), Positives = 47/101 (46%)
Frame = +2
Query: 101 PDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPY 280
P S+ + + K + + NA V+ K ELK + LEE VE + + EK+
Sbjct: 319 PHSEPGRKHSESNK--ELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEV----EKLQL 372
Query: 281 LIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKI 403
+ + +E L+E + K+ E+ LE + +EL++
Sbjct: 373 EMALNGSKEQIEALQSRLKEIEG-KLSEMKKLEAENQELEL 412
>At2g18876.2 68415.m02202 expressed protein
Length = 284
Score = 29.9 bits (64), Expect = 1.00
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 155 ARLNAKVDDYKDELKVKQNDVKNL--EEAVEELSLADDSEKIPYLIGEI--FICQNLEIT 322
ARL AKV+ + +L+ K+ ++ ++ EA +L +EK+ E + N ++
Sbjct: 2 ARLEAKVERLETQLQAKERELGSVTRTEAKNTAALKTQNEKLQKERDEFQRMVIANQQVK 61
Query: 323 LKNLEEAKAKKIHEIHDLEEKCEEL 397
+ L E K KK E L+E+ ++
Sbjct: 62 TQQLHETK-KKEKEYIKLQERLNQV 85
>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 371
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 155 ARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLA 256
A +AK++ + DE++V+ D++NL +EE +A
Sbjct: 37 AMRDAKINVFTDEIEVRGRDIQNLLSRIEESRVA 70
>At1g60870.1 68414.m06852 expressed protein
Length = 147
Score = 29.5 bits (63), Expect = 1.3
Identities = 28/97 (28%), Positives = 44/97 (45%)
Frame = +2
Query: 131 DQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQN 310
D +I RL +VD YK ++ + LEEA E L A+ L + +
Sbjct: 22 DPSRIEDLMRL-FEVDSYKAWAALESEQQQELEEAEESLREAE-------LELDRDMEWG 73
Query: 311 LEITLKNLEEAKAKKIHEIHDLEEKCEELKITNE*LE 421
+E + LEE + + E+ +LEEK E + T +E
Sbjct: 74 MEEYRRTLEEMERMEAAELKELEEKAETARRTGNLME 110
>At1g02330.1 68414.m00178 expressed protein contains similarity to
hepatocellular carcinoma-associated antigen 59
GI:7158847 from [Homo sapiens]
Length = 279
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/79 (20%), Positives = 38/79 (48%)
Frame = +2
Query: 119 ISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIF 298
+ Y +Q+ K R ++ ++ELK ++++ + + ++ + + + G
Sbjct: 102 VKYIEQELAKKRGRNIDDAEEVENELKRVEDELYKIPDHLKVKKRSSEESSTQWTTGIAE 161
Query: 299 ICQNLEITLKNLEEAKAKK 355
+ +E LKN+EE +A K
Sbjct: 162 VQLPIEYKLKNIEETEAAK 180
>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
similar to 17.9 kDa heat-shock protein [Helianthus
annuus] GI:11990130; contains Pfam profile PF00011:
Hsp20/alpha crystallin family; supporting cDNA
gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
small heat shock-like protein (RTM2) GI:7407072, small
heat shock-like protein [Arabidopsis thaliana]
GI:7407073
Length = 366
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +2
Query: 185 KDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHE 364
K+E + KQ + LEE + + K E + L+ K EEA AKK+ E
Sbjct: 143 KEEEEAKQMKKQLLEEKEALIRKLQEEAKAK----EEAEMRKLQEEAKAKEEAAAKKLQE 198
Query: 365 IHDLEEKCEELKITNE*LE 421
+ +EK EE K+ LE
Sbjct: 199 EIEAKEKLEERKLEERRLE 217
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 155 ARLNAKVDDYKDELKVKQNDV-KNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKN 331
A+ A++ ++E K K+ K L+E +E ++ + + E + LE +K
Sbjct: 172 AKEEAEMRKLQEEAKAKEEAAAKKLQEEIEAKEKLEERKLEERRLEE----RKLE-DMKL 226
Query: 332 LEEAKAKKIHEIHDLEEKCEELKI 403
EEAK KKI E ++E E+ KI
Sbjct: 227 AEEAKLKKIQERKSVDESGEKEKI 250
>At2g34580.1 68415.m04248 hypothetical protein
Length = 203
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/87 (20%), Positives = 39/87 (44%)
Frame = +2
Query: 149 KFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLK 328
K L + +DD + ++ L+ VEEL D+ + Y + C + ++
Sbjct: 66 KITILRSNIDDLDSKYHSYIQQLRTLKIEVEELKELDEEREKYYKVK----CSEMNEFMQ 121
Query: 329 NLEEAKAKKIHEIHDLEEKCEELKITN 409
N+E +++ +I +L + +E + N
Sbjct: 122 NVERFRSENRLQIENLRNRIKESNMMN 148
>At1g31380.1 68414.m03841 hypothetical protein
Length = 175
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 230 EAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHE-IHDLEEKCEELK 400
E + LA+ + Y+ F LE LK++ E + ++I E + D+++KC E+K
Sbjct: 104 ENISNDDLANAYSTLSYVTKAGFKLDWLEKDLKDVGETRIQEIEEELKDIKQKCVEMK 161
>At5g53220.1 68418.m06616 expressed protein ; expression supported
by MPSS
Length = 441
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 116 HISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVE 241
H+ E Q++ N+F L K + + E V + + +NL+E+ E
Sbjct: 28 HLETELQKRNNEFESLELKFKELESEKLVVEEESRNLKESEE 69
>At2g28360.1 68415.m03447 SIT4 phosphatase-associated family protein
contains Pfam profile: PF04499 SIT4
phosphatase-associated protein
Length = 826
Score = 28.3 bits (60), Expect = 3.0
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 128 EDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSE---KIPYLIGEIF 298
++++ I + LN+++ ++ L+ K K L VEE DS+ K P++ EIF
Sbjct: 81 DEEEIIQECKALNSRLINF---LREKTQVEKLLRYVVEEPEDDADSKRAFKFPFISCEIF 137
Query: 299 ICQNLEITLKNLEE 340
C+ +++ LK L E
Sbjct: 138 TCE-IDVILKTLVE 150
>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
Pfam profile PF03108: MuDR family transposase
Length = 462
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 65 VNMSTTAKGTFQPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE 244
VN S K + ++ +S +DQ N ARL+ D + V + DV E ++
Sbjct: 245 VNASKKRKSVIEAAAEEEVS-DDQ---NSDARLSESPDSELEAEIVDEEDVNVKAEEIQV 300
Query: 245 LSLADDSEKIPY 280
+ + E+IPY
Sbjct: 301 FDIRNYEEQIPY 312
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.5 bits (58), Expect = 5.3
Identities = 25/99 (25%), Positives = 55/99 (55%)
Frame = +2
Query: 104 DSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYL 283
+S + ++ +Q+K + R+ VD++K + + N + LE+ ++ S +I L
Sbjct: 366 NSSLQLASLEQKKTDD--RVLRLVDEHKRKKEETLNKILQLEKELD--SKQKLQMEIQEL 421
Query: 284 IGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELK 400
G++ + ++ + + +++ K KK+ E +LEEKC EL+
Sbjct: 422 KGKLKVMKHEDEDDEGIKK-KMKKMKE--ELEEKCSELQ 457
>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 199
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 305 QNLEITLKNL-EEAKAKKIHEIHDLEEKCEELKITNE*LESTL 430
+N + + NL ++AKA K HE+ L++ +E+K T + L+ +
Sbjct: 82 KNATLVVSNLLQKAKAAKSHEVSILKDCVDEMKDTIDELKQAV 124
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 221 NLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLK 328
N EEA+ E+S DDS +L E I + T++
Sbjct: 279 NREEAIGEISFVDDSHSSNFLFKEAMILYSSTSTIE 314
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.1 bits (57), Expect = 7.0
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +2
Query: 128 EDQQKINKFARLNAKVDDYKDELKVKQNDVKNL-EEAVEELSLADDSEKIPYLIGEIFIC 304
E ++K + L+ V KDE++ K D+K EE +E S EK +G+
Sbjct: 1512 EREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEK---EVGDSLTK 1568
Query: 305 QNLEITLKNLEEAKAKKIH-EIHDLEEKCEELK 400
E T + E AK ++ + L E+ E+LK
Sbjct: 1569 IKKEKTKVDEELAKLERYQTALTHLSEELEKLK 1601
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 59 LIVNMSTTAKGTFQPDSDVH-ISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEA 235
L++++ TT D + + ++ +++ + DD K EL ++ + K LEE
Sbjct: 236 LVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEE 295
Query: 236 VEELS 250
+ EL+
Sbjct: 296 LMELN 300
>At1g29090.1 68414.m03561 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 355
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 132 INKKLTSLLVSMLKLTIIRMSSK 200
IN K+TS+L ++ LTI+ M+ K
Sbjct: 6 INNKMTSILFMLVSLTILSMNLK 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,669,509
Number of Sequences: 28952
Number of extensions: 117689
Number of successful extensions: 496
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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