Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b13
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   5.8  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   5.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 569 VPGVCAYDGRGPCVIDKYL 513
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 569 VPGVCAYDGRGPCVIDKYL 513
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 439 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPS 549
           K I+  S IDN   NG   +    H+   +   P P+
Sbjct: 218 KRIEEKSQIDNLFHNGFMQEQSTHHQGQLVVGLPAPT 254


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 118 CTCAIRIVR*GCASPRPKVIDVRNSLKK 35
           C  A+ I+   C   R +V+ + N LKK
Sbjct: 299 CVVALIILILQCGRVRSEVVKILNVLKK 326


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 118 CTCAIRIVR*GCASPRPKVIDVRNSLKK 35
           C  A+ I+   C   R +V+ + N LKK
Sbjct: 225 CVVALIILILQCGRVRSEVVKILNVLKK 252


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 143 LEHKFEIRMHVCDPDRSIGL 84
           ++H   +R   CDPDR + L
Sbjct: 174 VKHLERLREERCDPDRPLPL 193


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 511 HKYLSITQGPLPSYAHTPGT 570
           H+Y   T  PLPS  H+  T
Sbjct: 392 HQYGYNTLSPLPSSVHSHST 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,657
Number of Sequences: 336
Number of extensions: 2714
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)