Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b13
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    28   4.7  
09_04_0598 + 18875270-18875437,18875547-18876179                       27   8.2  

>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = +1

Query: 310  PEGALEFFLRESHQYYRAVV--RMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDN---- 471
            P  A  FFL+ +      +    +H +LL ++  L G+  ++     + LL DI+     
Sbjct: 2206 PLQAGSFFLKHAEAVGEEIPARELHEILLLSLQWLSGTMTNSSPVYPLHLLRDIETRVWL 2265

Query: 472  -SIENGVQAKSDGSHKYLSITQ 534
             ++E+  Q K+DG +   S+TQ
Sbjct: 2266 LAVESESQCKADGEYAPSSVTQ 2287


>09_04_0598 + 18875270-18875437,18875547-18876179
          Length = 266

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 349 QYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSI 528
           +Y  A+  + L+LLF VA L  S     LN+   L++     +  G  A  DG  + L +
Sbjct: 114 EYMMALKYVALLLLFLVAFLSHSLAICFLNEASFLINTSPTLLAGGDGAGDDGGRRLLGL 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,001
Number of Sequences: 37544
Number of extensions: 281144
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)