Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b13
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   29   2.8  
SB_38860| Best HMM Match : GRP (HMM E-Value=0.47)                      29   3.7  
SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                27   8.5  

>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 439 KHIKLLSDIDNSIENGV-QAKSDGSHKYLS 525
           +H+KL+S++ NS+ N + +AK  G HK ++
Sbjct: 319 EHLKLMSELGNSLINSIYEAKIAGDHKKIN 348


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 433 LNKHIKLLSDIDNSIENG--VQAKSDGSHK-YLSITQGPLPSY 552
           L+KH +LLSD+  ++++G  V    D  H+ Y   T+GP   Y
Sbjct: 645 LDKHQELLSDLQQAVDDGKLVSFTVDSKHRLYNYNTKGPTGGY 687


>SB_38860| Best HMM Match : GRP (HMM E-Value=0.47)
          Length = 212

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 282 YRKYFT*ICKKITLPNNETNLSLMKYCSY 196
           +RKY   + K++ LP+  T  +  KYC Y
Sbjct: 181 FRKYCEGLPKELRLPSESTATTFRKYCEY 209


>SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 443 TLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPYR--RTHILPEP 571
           T SC  +++ V + V   +L DL +I ++   PYR    H++ +P
Sbjct: 41  TCSCRHSNLVVAQSVFVNSLSDLTSISQNSVKPYRLKLVHVVRDP 85


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 276 KYFT*ICKKITLPNNETNLSLMKYCSYYSFCYKFKWRTATR 154
           ++FT   +K+   N++    +   CSY    YK+K+ T TR
Sbjct: 528 RFFTKAIEKV---NSKETSHIASVCSYRYLSYKYKYNTFTR 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,214
Number of Sequences: 59808
Number of extensions: 340962
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)