Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b12
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing ...    30   0.68 
At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containi...    28   2.1  
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    28   2.1  
At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    27   3.6  
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil...    27   3.6  
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil...    27   3.6  
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil...    27   3.6  

>At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing
           protein similar to terminal ear1 [Zea mays] GI:3153237,
           SP|P08965 Meiosis protein mei2 {Schizosaccharomyces
           pombe}; contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 282

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 258 PNKDTQGRSRRLPRRYHPDPTQDLT 332
           PN +    ++ LP+RY P+P+Q++T
Sbjct: 72  PNPNVYESTQELPQRYSPNPSQEMT 96


>At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 332

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 37  LQTSFNYLCSSQFICLLTYKTIRIINIFTNFYMNQCMS*DCKCYLVVKLTKNGS 198
           +Q  FN++  S+ +       I +++  T  +M   M+ DC  ++V+   KNGS
Sbjct: 48  IQRIFNFMTGSEDL----KDDISVLDTGTLMWMASLMTSDCDYFMVITTNKNGS 97


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 31  LFLQTSFNYLCSSQFICLLTYKTIRIINIFTNFYMNQ 141
           + + T F ++C + F+ LLT   IR++ IF + + N+
Sbjct: 263 VLIDTGF-FVCVNSFLSLLTVMPIRVLLIFMDAFKNR 298


>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 174 HKVTFTIST--HTLIHIKIREDIDYSYCFICKKTD 76
           HK  F +S   + ++ + +  D+DY+Y F+ K +D
Sbjct: 782 HKGRFPVSVDRNYMLAVNVTSDVDYAYKFLSKLSD 816


>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 NKDTQGRSRRLPRRYHPDPTQD 326
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 NKDTQGRSRRLPRRYHPDPTQD 326
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 NKDTQGRSRRLPRRYHPDPTQD 326
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,619,704
Number of Sequences: 28952
Number of extensions: 86439
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)