Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b11
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    28   0.83 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.83 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   1.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.1  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   3.4  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   3.4  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   5.9  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   5.9  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   7.7  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.7  

>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 59  LFQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 181
           LFQ + +LT   S  A ++  SQV+P + I  A  AL Q KY
Sbjct: 6   LFQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -3

Query: 364 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 200
           D  +  +   A+C F   + + +   +S++ S +R+ ++  + ++     L W Q I  +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497

Query: 199 NFDSAWVFH 173
            FD+A +F+
Sbjct: 498 EFDNALIFY 506


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -3

Query: 430 LFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCGFFTGRRIRVGHGQSVVL 272
           LF     H +G  +AG  L  + VA  P+ PFA   FF GR+IR     +VVL
Sbjct: 527 LFAVQMFHNMGVGWAGSLLGFIAVALIPM-PFAF--FFFGRKIREKSKMAVVL 576


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 538  FEIGTFVARSVSESRLVECELRWLF 464
            F +G FVARS+ +SR++  +   LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = +3

Query: 333 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 512
           A+ T+  L +S AT  + A    ++ +L      + +   SS T++  +S ST+  SL  
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161

Query: 513 RATNVPISKLPSSPRSTT 566
            +TN   S  P+S  +++
Sbjct: 162 SSTNSTTSATPTSSATSS 179


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +2

Query: 137  DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSR 316
            D+I K     L++ +P G  +     LTP  VK E  V+     G+     +   D P+ 
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE-EVEMYENMGEMTVDVIKATDLPAA 1052

Query: 317  KEPTFREWHHWLVGNIQGNEVNSGET 394
                  +   ++V  +QG EV   +T
Sbjct: 1053 DSNGKSD--PFVVFELQGEEVYRTKT 1076


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 429 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 554
           +Q  +D+  S ++NH S+H T  D    S   + ++ P  +LP+SP
Sbjct: 36  KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 380 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 535
           N+G    QY G   P+ TG  +     + QP +  F +P+ T     +   F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 323 PTFREWHHWLVGNIQGNE--VNSGETLSQ 403
           P+F+E  HW+V ++   E  + SG  LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 314 RKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKLT 484
           +K+  F  + +W +   +G+ + S E   L   +G  PPE T  + Y+ + YK QP    
Sbjct: 2   QKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGF 60

Query: 485 FDEPRLTNTSSDKRANFKIAEFAKKY 562
           F E  L    + K  +     FAK +
Sbjct: 61  FTEDALKMVGT-KPEDVMQVSFAKDW 85


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 405 YWDKVSPEFTSLPWMLPTSQWCHSRN 328
           YW  V+P  T L   L  + WC + N
Sbjct: 23  YWPSVAPAATELISKLINAFWCQTLN 48


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 331 SRMAPLAGWQHPGQRGKLRRNFVPVRGLWTSGKDRPAQIRVPLVQTTIEAHIRRAET 501
           SR   +A  +   Q+G L R+FVP +    SG   PA         T EA ++  ET
Sbjct: 482 SRAGFVAALESRLQKGPLMRSFVPNKSKSPSGTKSPAS------GETSEAGVKETET 532


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 179 YPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQY 277
           YP+GV    G+E TP         ++  E G++
Sbjct: 67  YPTGVTESYGDEYTPVDTASSGINQYSTEKGKF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,392
Number of Sequences: 5004
Number of extensions: 55301
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)