Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b11
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 50 2e-06
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 44 7e-05
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 42 3e-04
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 2.0
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 29 2.0
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 2.6
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 28 4.6
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 4.6
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 6.1
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/110 (31%), Positives = 53/110 (48%)
Frame = +2
Query: 152 APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTF 331
+P L ++Y SG +V GN LTP+Q + G D+ S
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPSQ---------HSACGFGVDSLWILHDSEST----- 137
Query: 332 REWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 481
++ H + NIQG+ V++G L +Y+ PP+ TG HRY F L +Q +L
Sbjct: 138 -QFVHASLVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQL 186
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = -3
Query: 484 CELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCG 323
C L L V +++V+++A R +RA+VL S Y+ A D+ ++PVVPF++ G
Sbjct: 332 CNLPLLLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFSEFG 385
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Frame = +2
Query: 296 DPDAPSRKEPTFREWHHWLVGNIQGNE------VNSG---------ETLSQYVGSGPPEK 430
DPDAPS +R W H+L NI +E + SG L Y PP
Sbjct: 4 DPDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSG 63
Query: 431 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYN 565
+GLHRY + +Q K+ P + +R +F EFA K+N
Sbjct: 64 SGLHRYKYYALEQTGKV---RP----SPISERRSFDAQEFAAKHN 101
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 458 RGTRICAGLSFPEVQSPRTGTKFRRSLPRCPGCCQPASGAIREMWVLYGTAHQGRS 291
+G + +S EV+SP + ++P PG P+SGA+ + LY H G +
Sbjct: 539 QGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTD---LYQRLHAGEN 591
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -2
Query: 410 PRTGTKFRRSLPRCP-GCCQPASGAIREMWVLYGTAHQGRSWPECSTVLAPRPISLKARL 234
PR + RS +C CC+ R L T H+GR P T RP+ +K
Sbjct: 173 PRRSLRPNRSRSQCSLECCEEEDMETRSKARLM-TPHEGRRTPRTRTSARTRPLGIKKEP 231
Query: 233 SPELESAHYLL 201
+++ +L
Sbjct: 232 EDDVDHVKAML 242
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 29.5 bits (63), Expect = 2.0
Identities = 26/100 (26%), Positives = 44/100 (44%)
Frame = +2
Query: 194 EVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGN 373
E+ E + + + + + EP Q + + AP+ KEP RE G+ G+
Sbjct: 788 ELGESGKSGESSISKRSKIPRENEPVQQTEIKKSTQPAPASKEPK-REGASGESGSGSGS 846
Query: 374 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDE 493
V+S T GP +KT + ++ QP+K T +E
Sbjct: 847 SVSSSITKRSL---GPLDKTDSGKVA--MFAQPAKETANE 881
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/98 (26%), Positives = 44/98 (44%)
Frame = -3
Query: 541 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALD 362
N ++G + + E R +L W + + ++VQ C R+ HVL + V LD
Sbjct: 92 NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVLHRDLKPAN-VFLD 150
Query: 361 VANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH 248
AN V K G F R+ + H S +++ P++
Sbjct: 151 -ANMNV----KLGDFGLARV-LSHDTSFAKTFVGTPYY 182
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 107 KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW 256
+SFE P V +AP+ L+++ + +E + + K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 28.3 bits (60), Expect = 4.6
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Frame = +2
Query: 71 IRVLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQ--VKDEP 244
I V + T A A V V PK P A++Q K K GN L ++
Sbjct: 527 ITVDSEKQKTAATKASAPFVFTAVQPK-PEAVVQTKNCRSSVRKSGNWLDTISKSLQARK 585
Query: 245 SVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWL 352
K E + PDAP R++ + R+ +WL
Sbjct: 586 EAKCKEENFEGLREMFATPDAPQRQKKSTRKSGNWL 621
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 284 LAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVG 412
L + D P + E E+ + +GN+ GNEV S E L Q +G
Sbjct: 69 LVLEISDKPGKHEKGEPEFKY--IGNMHGNEVVSREILLQLIG 109
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Frame = +2
Query: 170 QVKYPSGVEVKEGNELTPTQVKDEPSVKWD------AEPGQY--YTLAMTDPDAPSRKEP 325
Q+K GV K L+ TQ+ SV+WD A+PG + + +TD + +
Sbjct: 123 QIKALPGVRAKP---LSSTQI----SVEWDSLQPLTADPGDLISHKIILTDKETGDVTQR 175
Query: 326 TFREWHHWL-VGNIQ 367
T W +WL V N+Q
Sbjct: 176 TTNSWTNWLVVSNLQ 190
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 380 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 532
NS T SQ V S PP + ++ L K PS+ +F R+ +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 SGKDRPAQIRVPLVQTTIE-AHIRRAET 501
S KD+P+ ++VPL +T++ +++ +ET
Sbjct: 856 SNKDKPSNVKVPLPSSTVDTTNLKTSET 883
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,307,264
Number of Sequences: 59808
Number of extensions: 467322
Number of successful extensions: 1493
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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