Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b11
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical ... 209 9e-55
AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical ... 208 2e-54
AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical ... 88 4e-18
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 36 0.015
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 32 0.33
U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical pr... 31 0.76
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 30 1.0
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 30 1.3
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 30 1.3
AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine re... 29 1.8
U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical ... 27 7.1
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 27 9.4
>AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical
protein F40A3.3a protein.
Length = 221
Score = 209 bits (511), Expect = 9e-55
Identities = 95/162 (58%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Frame = +2
Query: 86 RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWD 259
R ++T+A ++F +V+PDV+ P+ ++ VK+ SGVE GN LTPTQVKD P VKWD
Sbjct: 32 RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91
Query: 260 AEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGL 439
AEPG YTL TDPDAPSRKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGL
Sbjct: 92 AEPGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGL 151
Query: 440 HRYVFLLYKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKY 562
HRYV+L+YKQ ++ + RLTNTS DKR +K A+F K+
Sbjct: 152 HRYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKH 193
>AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical
protein F40A3.3b protein.
Length = 185
Score = 208 bits (508), Expect = 2e-54
Identities = 93/155 (60%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Frame = +2
Query: 104 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYY 280
A++F +V+PDV+ P+ ++ VK+ SGVE GN LTPTQVKD P VKWDAEPG Y
Sbjct: 3 AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62
Query: 281 TLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLL 460
TL TDPDAPSRKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGLHRYV+L+
Sbjct: 63 TLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLI 122
Query: 461 YKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKY 562
YKQ ++ + RLTNTS DKR +K A+F K+
Sbjct: 123 YKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKH 157
>AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical
protein Y69E1A.5 protein.
Length = 172
Score = 88.2 bits (209), Expect = 4e-18
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Frame = +2
Query: 92 MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW---DA 262
MS ++ +F ++ P +I AP L + + G++V+ G + +K+ P +W A
Sbjct: 1 MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57
Query: 263 EPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEK 430
+P YT+ M DPD SRK P+ EW HWLV NI + +N G+ Y P +
Sbjct: 58 DPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPR 117
Query: 431 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKK 559
T LHRYV L+++ + R++ RA F + +F +K
Sbjct: 118 TDLHRYVILMWEHAGR------RISVPKPSSRAKFNVKQFIEK 154
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +2
Query: 167 LQVKYPSGVEVKEGNELTPTQVKDEPSVKWDA--EPGQYYTLAMTDPDAPSRKEPTFREW 340
LQV + + + V GN +T P + ++ G + TL M + D + E
Sbjct: 157 LQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEI 216
Query: 341 HHWLVGNI-QGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSS 517
W++ NI G +++G + Y+ P TG HR F+L++ + F ++ S
Sbjct: 217 VQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF---QIQGNSL 273
Query: 518 DKRANFKIAEFAKKY 562
D R + +I++F KK+
Sbjct: 274 DTRIH-EISKFYKKH 287
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 396 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 566
C ST+ +K Q C TCS C+++ SS S+S S + ++ S SS S++
Sbjct: 18 CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSS 74
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 396 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 524
C S++ K Q C TCS C+++ SS S+S S + T+
Sbjct: 147 CTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTD 189
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 387 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 524
A C ++ L L K Q C TC CT++ +S +TS S + TN
Sbjct: 64 ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSSTCVDLTN 108
>U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical
protein F41G3.20 protein.
Length = 232
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 387 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLP 545
A C ++ L L K+Q C TC CT++ ++ S+S + L + +S P
Sbjct: 101 ASYCANSAYLTLMKQQ-CPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCP 152
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 387 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 494
A C ++ L L K+Q C TC CT++ SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 441 CRPVFSGG-PEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDG--ASGSVMA 286
CRP SGG P PTY D S P T+Q + VG++ +G +G MA
Sbjct: 18 CRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNGDPVAGGPMA 71
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 344 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 481
HWL +I +N+ G T + YV P + + H Y+F+L QP+ +
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASM 424
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 209 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 373
N L +V+ + V DA E G ++ T+P P + P E W + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383
Query: 374 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 487
E+ GE L + + P+K LH L++ P K F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 209 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 373
N L +V+ + V DA E G ++ T+P P + P E W + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383
Query: 374 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 487
E+ GE L + + P+K LH L++ P K F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416
>AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine
receptor, class sx protein7 protein.
Length = 274
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 470 VVCTRGTRICAGLSFPEVQSPRT 402
++C GT + GL+FP++Q RT
Sbjct: 58 IICLLGTMVDVGLAFPDIQLDRT 80
>U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical
protein C26B2.8 protein.
Length = 373
Score = 28.3 bits (60), Expect = 4.1
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Frame = +2
Query: 110 SFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTP---TQVKDEP--SVKWDAEPGQ 274
+F +++VP ++P APA L + S ++ G ++ D P S + + +
Sbjct: 201 TFRENRIVPRLLPVAPAYELIATF-SDEQISMGQLFDADILDKLADPPVMSAGVELQDEK 259
Query: 275 YYTLAMTDPDAPSRKEPTFREWHHWLVGNIQG--NEVNSGETLSQYVGSGPPEKT----G 436
YT+ + D + K T WLV NI ++ V PP+ T G
Sbjct: 260 LYTIILAD---ATSKAVT------WLVANIAAFDGQLEIHRRTKSAVSYQPPDSTDRPVG 310
Query: 437 LHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKY 562
+H + LY+Q T+ + L + D +F E+ ++Y
Sbjct: 311 MHTMILALYEQND--TWTQKDLARIAMD---DFNFTEWLEEY 347
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 562 VLLGELGNFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSR 413
V+ LG+ G + + + EC LR+L ++H + CL + R
Sbjct: 1536 VVQSVLGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQR 1585
>AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical
protein F42G8.5 protein.
Length = 304
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +2
Query: 89 AMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEG-NELTPTQVKDEPSVKWDAE 265
AMS V K + ++ P VIP L + P+ + V N L T V S D
Sbjct: 188 AMSNVVKPHDEKKLYPPVIPGCSTLSLHRRSPNNIFVASPYNTLRATSVGRYQSGFLDTN 247
Query: 266 PGQYYTLAMTDPDAPSRKE 322
L P SR++
Sbjct: 248 SIMENRLGSRQPSVASRRQ 266
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 435 ACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKL 542
AC +TC +C R H T + T A + ++++
Sbjct: 57 ACCNTCGTCNGKRRRRHLTMLSNATYVADHEKVNRV 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,223
Number of Sequences: 27780
Number of extensions: 327388
Number of successful extensions: 1047
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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