Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b10
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 302 1e-82
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 293 5e-80
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 293 5e-80
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.73
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote... 30 1.3
At1g29195.1 68414.m03572 expressed protein 30 1.3
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 5.1
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 8.9
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 302 bits (742), Expect = 1e-82
Identities = 137/223 (61%), Positives = 173/223 (77%), Gaps = 1/223 (0%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
++PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 564
NW + E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 565 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGV 693
+ EIQ+NGG I KV +A EK +PVD++F +DEMID IGV
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGV 223
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 293 bits (720), Expect = 5e-80
Identities = 135/223 (60%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 564
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 565 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGV 693
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID IGV
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGV 223
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 293 bits (720), Expect = 5e-80
Identities = 135/223 (60%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 564
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 565 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGV 693
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID IGV
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGV 223
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -2
Query: 387 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 208
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 207 RFSNHVGHTGLITD 166
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 382
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 666 LGKHRIDRDRFLQMFSGPFHFVLDGTT 586
L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 154 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 276
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 525 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 656
S + K A +EGS G +G E G+ SG+ Y CRFC
Sbjct: 18 SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 674 ISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 564
++ WA ES IG SLA T SS PL +S++
Sbjct: 387 VTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVL 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,158,304
Number of Sequences: 28952
Number of extensions: 346893
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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