Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b06
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   1.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   2.3  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    25   4.1  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   7.2  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   9.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   9.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    24   9.5  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 117 FFNDILRFHTLLKPEIAIHFFLIGQCA 197
           F N +LRF+  LK ++ +HF L   C+
Sbjct: 783 FTNILLRFYLCLKDDVDMHFLLNMDCS 809


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 238 LFSQIKHKEIDLLTIRKMFPLK*SKVIAKIFKVVKME 348
           L++Q++ + +DLL+  K   LK S     I K  KME
Sbjct: 487 LYTQLRQEHLDLLSKYKQIQLKASSAQEAIDKKEKME 523


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 310 KVIAKIFKVVKMEPIDLETKKCCPNCSQPYQFQILSTISKINLPL 444
           K   K F++   + +D E+ + CPNC   +    ++ + K   P+
Sbjct: 46  KKCRKAFRIQFDQTMD-ESDEYCPNCDNHFVIDAITKVEKPKAPI 89


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 345 HFYNFEDFSNYFRL 304
           H Y+F+D  NYF+L
Sbjct: 387 HEYHFKDLENYFKL 400


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 392 WLQLGQHFFVSRSMGSIFTTLKILAITLDYFKGNIL 285
           + QLG  ++V+ S    FT   +  I ++YF  N++
Sbjct: 480 YFQLGSTYWVTLSYLCTFTCCIMTIIRINYFVDNVV 515


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 221 FSTNTNGRRALAD*EKV-YC 165
           FST+ NG++ LAD  +V YC
Sbjct: 740 FSTDNNGQKILADISQVCYC 759


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 352 IDLETKKCCPNCSQPYQFQILSTISK 429
           I+   +KC PNC  P  + +L +ISK
Sbjct: 44  IEKHIQKCPPNCKLPALY-LLDSISK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,662
Number of Sequences: 5004
Number of extensions: 35751
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)