Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b06
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0098 - 12844631-12845074,12845329-12846570                       29   1.7  
09_04_0527 - 18337968-18338077,18338440-18341212                       29   2.3  
09_04_0528 - 18348071-18348136,18348477-18351209                       28   3.1  
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693...    27   9.3  

>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +1

Query: 193 ARRPLVFVENTIQTFLFSQIKHKEIDLLTIRKMFPLK*SKVIAKIFKVVKMEPIDLETKK 372
           AR+P + V   ++   + + +H E+DL   R +  +   +++AK+  +V M  I   T+ 
Sbjct: 88  ARKPWIAVG--MRNVDYKRARHFEVDLSAFRNILEIDRERMVAKVEPLVNMGQI---TRA 142

Query: 373 CCP 381
            CP
Sbjct: 143 TCP 145


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 108 LLWRFNNTKEWLLMYGT*VIDLMNNENADR 19
           L ++  N K+W L Y   + ++ NNEN +R
Sbjct: 396 LSFKSKNNKDWRLFYNQLISEVHNNENLNR 425


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 90  NTKEWLLMYGT*VIDLMNNENADR 19
           N KEW L Y   + ++ NNEN +R
Sbjct: 401 NKKEWRLFYNQLISEVHNNENLNR 424


>05_07_0337 -
           29368823-29368863,29369011-29369104,29369231-29369347,
           29369751-29369804,29369910-29370026,29370170-29370310,
           29370402-29370820,29370906-29370934,29371287-29371354,
           29371833-29371907
          Length = 384

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 350 GSIFTTLKILAITLD-----YFKGNILRIVNKSISLCFI*LNR 237
           GS+F  + + A TL      Y KG IL +    IS+CF  + R
Sbjct: 326 GSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRR 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,814
Number of Sequences: 37544
Number of extensions: 171430
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)