Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b06
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     28   3.1  
SB_42856| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)                28   4.2  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     27   9.6  

>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 374 HFFVSRSMGSIFTTLKILAITLDYFKGNI--LRIVNKSISLCFI*LNRNVC 228
           +FFV++S      TL   + + DYFKG I  L+I N  ++   I L +++C
Sbjct: 121 NFFVAKSDNKRPITLGANSRSTDYFKGRIACLQIYNSELTGTEIELVKHIC 171


>SB_42856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 380 GQHFFVSRSMGSIFTTLKILAITLDY 303
           GQ+FF+   + +IF TL I+ + LDY
Sbjct: 20  GQYFFLYAWLFTIFITLVIVTVYLDY 45


>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 510

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 330 QSCKNGTHRSRNKKMLSQLQPTLSISNTFNYIKDQLTI 443
           + C+    +SRN + LS   PT+  S T + IK  LTI
Sbjct: 93  KECEEQLKKSRNPENLSDSLPTMYSSVTVSVIKKFLTI 130


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 403 IDKVGC-NWDNIFLFLDLWV 347
           + KVGC NW  + + LD WV
Sbjct: 204 VPKVGCSNWKRVIMVLDGWV 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,488,890
Number of Sequences: 59808
Number of extensions: 234794
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)