Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b06
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   2.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   4.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -2

Query: 411 YLKLIRLAAIGTTFFCF*IYGFHFYNFEDFSNYFRLL*GKHFTNSQQINFLMFYLTK*KC 232
           +L  I L  I    + F I   +  NF + S  ++ +   +F NS+  +F+ F     +C
Sbjct: 87  FLLFILLVQIAVAVYAF-IVVKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQC 145


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 362 KQKNVVPIAANLINFKYFQL 421
           K KN+ PI  +L+   YF++
Sbjct: 171 KDKNMAPILKDLMETSYFKV 190


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 21  YRHFHYSLNRLPMYRT*VTTPSYY 92
           Y+  HY++N +      V  P YY
Sbjct: 331 YKPLHYNINYIEQIPVPVPFPVYY 354


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 146 LIKT*NSNTLFLNRPMRAD 202
           L+K  N N  FL RP+  D
Sbjct: 14  LLKKRNENDPFLKRPITGD 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,055
Number of Sequences: 438
Number of extensions: 2330
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)