BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12b06 (454 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g57710.1 68418.m07214 heat shock protein-related contains sim... 27 4.5 At1g62150.1 68414.m07011 mitochondrial transcription termination... 27 5.9 At2g33735.1 68415.m04135 DNAJ heat shock N-terminal domain-conta... 27 7.8 At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote... 27 7.8 >At5g57710.1 68418.m07214 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 Length = 990 Score = 27.5 bits (58), Expect = 4.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 364 TKKCCPNCSQPYQFQILSTISKINLP 441 T KCCP C Q Y+ + L+ I ++ P Sbjct: 414 TLKCCPQCLQSYERE-LAEIDSVSSP 438 >At1g62150.1 68414.m07011 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 463 Score = 27.1 bits (57), Expect = 5.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -1 Query: 238 EMFVLYFRRTLTVGAHWPIKKKCIAISGFNK 146 E F +Y R LTV W + KKC A G+++ Sbjct: 267 ENFNVYKRFGLTVNDVWELFKKCPAFLGYSE 297 >At2g33735.1 68415.m04135 DNAJ heat shock N-terminal domain-containing protein similar to SP|P30725 Chaperone protein dnaJ Clostridium acetobutylicum; contains Pfam profile PF00226 DnaJ domain Length = 119 Score = 26.6 bits (56), Expect = 7.8 Identities = 7/18 (38%), Positives = 16/18 (88%) Frame = -2 Query: 354 YGFHFYNFEDFSNYFRLL 301 +GF F++FED+ +++++L Sbjct: 10 HGFDFFDFEDYKDHYKVL 27 >At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein kinase, putative Length = 980 Score = 26.6 bits (56), Expect = 7.8 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Frame = -3 Query: 389 LQLGQHFFVSR---SMGSIFTTLKILAITLDYFKGNI---LRIVNKSISL 258 L L ++FFV + +GS+ TLK L+++ + GNI L ++N+ + L Sbjct: 95 LDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYL 144 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,938,078 Number of Sequences: 28952 Number of extensions: 162409 Number of successful extensions: 289 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 289 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 742437000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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