Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b06
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57710.1 68418.m07214 heat shock protein-related contains sim...    27   4.5  
At1g62150.1 68414.m07011 mitochondrial transcription termination...    27   5.9  
At2g33735.1 68415.m04135 DNAJ heat shock N-terminal domain-conta...    27   7.8  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    27   7.8  

>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 364 TKKCCPNCSQPYQFQILSTISKINLP 441
           T KCCP C Q Y+ + L+ I  ++ P
Sbjct: 414 TLKCCPQCLQSYERE-LAEIDSVSSP 438


>At1g62150.1 68414.m07011 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 463

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 238 EMFVLYFRRTLTVGAHWPIKKKCIAISGFNK 146
           E F +Y R  LTV   W + KKC A  G+++
Sbjct: 267 ENFNVYKRFGLTVNDVWELFKKCPAFLGYSE 297


>At2g33735.1 68415.m04135 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P30725 Chaperone
           protein dnaJ Clostridium acetobutylicum; contains Pfam
           profile PF00226 DnaJ domain
          Length = 119

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 7/18 (38%), Positives = 16/18 (88%)
 Frame = -2

Query: 354 YGFHFYNFEDFSNYFRLL 301
           +GF F++FED+ +++++L
Sbjct: 10  HGFDFFDFEDYKDHYKVL 27


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
 Frame = -3

Query: 389 LQLGQHFFVSR---SMGSIFTTLKILAITLDYFKGNI---LRIVNKSISL 258
           L L ++FFV +    +GS+  TLK L+++ +   GNI   L ++N+ + L
Sbjct: 95  LDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYL 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,078
Number of Sequences: 28952
Number of extensions: 162409
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)