Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b05
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444...    30   0.86 
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    29   1.5  
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028           29   2.6  
02_01_0660 - 4913033-4913368                                           28   4.6  
09_04_0239 + 15954995-15956242                                         27   8.0  
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346...    27   8.0  
04_04_1300 - 32457901-32457985,32458375-32459468                       27   8.0  
04_04_0978 - 29856872-29858023                                         27   8.0  

>07_01_0597 +
           4438858-4439847,4439936-4440067,4440397-4441176,
           4441359-4441646,4441710-4441808
          Length = 762

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 148 CTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKT 318
           CTVAA+  R     + A + + +         RLL A AP A A  Q  +  +  KT
Sbjct: 71  CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKT 127


>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 39  TKKNKMGSMTFLLGVFALVTFVFYAEAAGTCPLP 140
           T+++  G M FL+ V ALVTFV + + A +C +P
Sbjct: 362 TRRSLFGYMGFLVAV-ALVTFVGFVKGAISCYIP 394


>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
          Length = 482

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 220 ATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVT 330
           +TP RV S ++    PGAPA    A RA +A   +V+
Sbjct: 15  STPLRVASPVVRFRRPGAPAPVVSAARASSAAVPAVS 51


>02_01_0660 - 4913033-4913368
          Length = 111

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 114 EAAGTCPLPSKVYGCSPKCKEDYECTH 194
           +AA   P PSK +GC+P   +D  C H
Sbjct: 40  DAAAAAPAPSKGHGCNP--LKDKTCRH 64


>09_04_0239 + 15954995-15956242
          Length = 415

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 103 SSTPKPLA-RALFLRKCTVAALNARRTTNVHTAR 201
           +ST  P+A R    R+CT+    A +TT++H  R
Sbjct: 354 TSTSSPMAKRRRRRRRCTLHGAGAEKTTSMHALR 387


>08_02_0654 -
           19732679-19732837,19733234-19733479,19734470-19734667,
           19735085-19735201,19735289-19735459,19735632-19735893,
           19736205-19736353
          Length = 433

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 359 HWITLAYFVRVTLDVFAVNAR 297
           +W+T+ YF  +T D+F  N R
Sbjct: 52  YWLTVHYFTNLTADIFLGNHR 72


>04_04_1300 - 32457901-32457985,32458375-32459468
          Length = 392

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 25/79 (31%), Positives = 31/79 (39%)
 Frame = +1

Query: 76  WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLT 255
           W+   WL   S    L     LR   V    +R TT V       LI  TP+R Q  +  
Sbjct: 176 WLAKTWLLRYSVDALLRNLSTLRSLGVQ--QSRITTTVRM--QPTLITQTPARFQKLVGR 231

Query: 256 AEAPGAPANTQPAERAFTA 312
            EA G P ++     AF A
Sbjct: 232 VEACGVPPSSGMYMWAFFA 250


>04_04_0978 - 29856872-29858023
          Length = 383

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 AAYGGGTGSSSKHATG 293
           AAYGGG GS  +H  G
Sbjct: 101 AAYGGGAGSGGRHGHG 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,462
Number of Sequences: 37544
Number of extensions: 245674
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)