Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b05
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  33   0.16 
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)                   31   0.67 
SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)               31   0.67 
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               29   1.5  
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           28   4.7  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          28   4.7  
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)                      28   4.7  
SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)               28   4.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  27   6.2  
SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)               27   8.2  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              27   8.2  
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 205 AVLIRATPSRVQSRLLTA-EAPGAPANTQPAERAFTAKTSSVTLTKYAS 348
           A L+R TP   QSR +T  EA GA   T  A+ A +++ S VT  ++A+
Sbjct: 790 AQLVRTTPFNTQSRAVTIHEATGARITT--AQEALSSRDSGVTSPRFAT 836


>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
          Length = 591

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = +1

Query: 76  WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLT 255
           W+C  ++ +  T + L+ A+    C   A   +R       +          +      T
Sbjct: 209 WMCHCFIAIRDTGERLSHAV---GCAFTAC-LQRKQKAQALQQQAKAAKEGEKTDGTQAT 264

Query: 256 AEAPGAPANTQPAERAFTAKTSSVT 330
           + AP   AN Q + RAF +  SSVT
Sbjct: 265 STAPSTVANQQQSSRAFVSTPSSVT 289


>SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 255 GGGTGSSSKHATGGTGVYCENVKCNS 332
           GGG+G+ S  A GG G YC    C++
Sbjct: 247 GGGSGTHSGQAGGGGGSYCGGSSCSA 272


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/86 (23%), Positives = 29/86 (33%)
 Frame = +3

Query: 90  LVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECTHGKVXXXXXXXXXXXXEPAAYGGGTG 269
           L T +    AA  C   S+   C+P C + Y+   G                     GT 
Sbjct: 4   LWTLLLAVMAASFCAKGSRPDKCAPICNKMYQPVCGS-DNVTYSNPCMLRSATCKSNGTI 62

Query: 270 SSSKHATGGTGVYCENVKCNSYEICK 347
           +       G+   CE  KC   ++CK
Sbjct: 63  TMKHRGKCGSSQSCEQKKCKGTKVCK 88


>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 497

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 35  VNKKKQNGFNDIPVGCVRVGYLCLLRRSRWHVPSS 139
           VN  K   +    +  +R GYLC +RRSR  +P S
Sbjct: 148 VNANKWLPWYAAMINPIRRGYLCAIRRSREQLPLS 182


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 255 GGGTGSSSKHATGGTGVYCENVKC 326
           GGG+G +   A GG G YC    C
Sbjct: 377 GGGSGITWNQAGGGGGSYCAGSSC 400


>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
          Length = 409

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 2   SLHRAVEVLCSVNKKKQNGFNDIPVGCVRV 91
           ++  A EVL  +++ K+NG +D+P G V V
Sbjct: 165 AVRAAFEVLNRLSESKENGLDDLPSGHVTV 194


>SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)
          Length = 98

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 309 CENVKCNSYEICKRDPMTKRMKCSRA*KE 395
           C  V+C SY++C+      R  C+RA K+
Sbjct: 17  CATVRCASYKVCEEVNGIARCVCNRACKK 45


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 12   EQLKCCVL*TKKNKMG-SMTFLLGVF 86
            + +KCCV  +K+N+ G ++ FLL +F
Sbjct: 1741 DDIKCCVRKSKRNRKGQTLRFLLKIF 1766


>SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 320 DVFAVNARSAGCVFAGAPGAS-AVSSRL*TRLGVA 219
           DVFAV AR   C+ + A G S    SRL  R  VA
Sbjct: 173 DVFAVVARPNNCIISLADGVSWGTKSRLAARSAVA 207


>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
          Length = 91

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +1

Query: 139 LRKCTVAALNARRTTNVHTARSAVLIRATP-----SRVQSRLLTAEAPGAPANTQPAERA 303
           L+ C V     RRT+    +RS    R  P      R   R  +  A G P +T+P  + 
Sbjct: 7   LKMCQVDP-QQRRTSACSRSRSCSADRTEPRLTAQERHHHRSSSVPAHGRPQSTEPRLKQ 65

Query: 304 FTAKTSSVTLTKYASV 351
            TA   + T+T+ + V
Sbjct: 66  STATGQNTTITEESEV 81


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +1

Query: 160  ALNARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVTLTK 339
            A+   R     T  +A+ +++T    Q RL  +E   +    Q   RA+ A+   V + +
Sbjct: 2600 AMRKARENYTETRAAAITLQSTWRGHQQRLQYSEICKSAVVLQSHVRAYQARRRFVVMKQ 2659

Query: 340  YASVIQ*R 363
             A+VIQ R
Sbjct: 2660 AAAVIQTR 2667


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 178 TTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERA 303
           +T V   RS+  + ATP R +    ++   G+PA TQ  ERA
Sbjct: 625 STPVRDQRSSPPLTATPPRSRRNSFSSAVSGSPA-TQEEERA 665


>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +1

Query: 139 LRKCTVAALNARRTTNVHTARSAVLIRATP-----SRVQSRLLTAEAPGAPANTQPAERA 303
           L+ C V     RRT+    +RS    R  P      R   R  +  A G P +T+P  + 
Sbjct: 7   LKMCQVDP-QQRRTSACSRSRSCSADRTEPRLTAQERHHHRSSSVPAHGRPQSTEPRLKQ 65

Query: 304 FTAKTSSVTLTKYASV 351
            TA   + T+T+ + V
Sbjct: 66  STATGQNTTITEESEV 81


>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 97  PLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGA 273
           P SST     +       T +     RTT++ T ++  +  +TPS V + + T    GA
Sbjct: 57  PTSSTSTTQHQVTTTSVSTPSTTTPPRTTSISTTKTTRVTTSTPSAVTTAVTTVVRDGA 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,098
Number of Sequences: 59808
Number of extensions: 280408
Number of successful extensions: 748
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)