Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b05
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37250.1 68415.m04570 adenylate kinase family protein contain...    28   2.9  
At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    27   5.1  
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    27   5.1  
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote...    27   6.7  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At2g37250.1 68415.m04570 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 284

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 299 RSAGCVFAGAPGAS--AVSSRL*TRLGVARIRTADL 198
           R+   VF G PG      +SRL T LGV  I T DL
Sbjct: 50  RNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDL 85


>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 253 TAEAPGAPANTQPAERAFTAKTSSVT 330
           T+ AP  P N + AER FT +  S++
Sbjct: 8   TSHAPPLPTNRRTAERTFTVRCISIS 33


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 97  PLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRA--TPSRVQSRLLTAEAPG 270
           P+  TP  + +   +R C+ A     + T  H  RS  L ++  T ++ +SR  T E   
Sbjct: 290 PVIETPSNVMKTKPMRSCSGAKSMTPKRTTKHARRSLNLEKSAETLTKAESRAATGELRS 349

Query: 271 APAN 282
             AN
Sbjct: 350 KRAN 353


>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 397

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +1

Query: 166 NARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVTLTKYA 345
           NAR T N    R +VL  A  SRV + + T              RAF A++ ++T  K +
Sbjct: 26  NARPTGN---GRPSVLNSAPLSRVHNEMETQIHLIEQEAYSSILRAFKAQSDAITWEKES 82

Query: 346 SVIQ*RRE*NAAELKKREI 402
            + + R+E   ++ + RE+
Sbjct: 83  LITELRKELRVSDEEHREL 101


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 79  VCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTA 198
           +CS+  P+SS P  +    FL   T   ++ ++   +H A
Sbjct: 739 LCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778


>At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 999

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 38  NKKKQNGFNDIPVGCVRVGYLCLLRR 115
           N+K+ +     P GCV +GY  +L+R
Sbjct: 560 NEKRFDSMLTFPTGCVHLGYKQMLKR 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,952
Number of Sequences: 28952
Number of extensions: 188077
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)