Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b04
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92...    29   2.3  
01_06_0025 - 25716563-25718332                                         28   3.0  
01_01_1068 - 8413269-8413589,8414011-8414262,8417472-8417603,841...    28   3.0  
04_02_0027 + 8715882-8715928,8716570-8716934,8717147-8717506,871...    27   5.3  
03_04_0007 + 16265360-16266982                                         27   5.3  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    27   5.3  
11_06_0125 - 20356683-20357071,20359531-20362285                       27   7.0  
04_03_0054 - 10296278-10296727                                         27   9.2  
01_05_0035 + 17440828-17441364                                         27   9.2  

>03_01_0117 +
           925850-925988,926075-926494,926607-926785,927568-927686,
           928180-928498
          Length = 391

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 35  DFGLSSENIMSLSPFFRSPFTDVTGGMISHQLLGRCQKEEA--RYMDCL 175
           +F +  EN++      R P   + GG++  +LLGR QK+EA  RY  C+
Sbjct: 241 EFPMLQENVLQSFKLPR-PVLCI-GGIVKVELLGRVQKQEADDRYYICI 287


>01_06_0025 - 25716563-25718332
          Length = 589

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 284 HERQRQISQGKLTGDEKYVSPRVDSY 361
           H+RQR  ++G+  G   Y +P +D+Y
Sbjct: 443 HDRQRVATRGQADGVRLYTTPHMDTY 468


>01_01_1068 -
           8413269-8413589,8414011-8414262,8417472-8417603,
           8417684-8417812
          Length = 277

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 346 GAHILFVACKFSLRNLSLPLMSYCQKSLKLFGK 248
           GA+IL V  + +L  +S+PL S CQ++ K  GK
Sbjct: 130 GANILTVVLRDALNMISIPLASCCQRN-KDMGK 161


>04_02_0027 +
           8715882-8715928,8716570-8716934,8717147-8717506,
           8718063-8718576,8718657-8718684
          Length = 437

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 29  FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 130
           F+DF L  EN+MSL+  + S F       +SHQL
Sbjct: 283 FHDFNL--ENLMSLAKLYPSDFNSGNLRDLSHQL 314


>03_04_0007 + 16265360-16266982
          Length = 540

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 284 HERQRQISQGKLTGDEKYVSPRVDSY 361
           H+RQR  ++G   G   + +PR+D+Y
Sbjct: 443 HDRQRFAARGDAEGVRLFATPRMDAY 468


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 29  FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 130
           F+DF L  EN+MSL+  + S F       +SHQL
Sbjct: 665 FHDFNL--ENLMSLAKLYPSDFNSGNLRDLSHQL 696


>11_06_0125 - 20356683-20357071,20359531-20362285
          Length = 1047

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 70  VAVLSLTVYGCYWWHDFPPTSGSLPE 147
           V++ +L+VY  Y + DF   SGSLPE
Sbjct: 390 VSISNLSVYLEYLYLDFNAISGSLPE 415


>04_03_0054 - 10296278-10296727
          Length = 149

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 29  FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 130
           F+DF +  EN+MSL+  + S F       +SHQL
Sbjct: 102 FHDFNI--ENLMSLAKLYPSDFNSRNLRDLSHQL 133


>01_05_0035 + 17440828-17441364
          Length = 178

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 121 PPTSGSLPERGSQIHGLSRSLWFGTRKGQVRSFVRRL 231
           PP    LP     +HGL R    G+ +  V + VR L
Sbjct: 31  PPPPSPLPSSAEPLHGLCRKPGAGSHRALVATPVRAL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,104
Number of Sequences: 37544
Number of extensions: 248257
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)