Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b04
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           28   3.1  
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)                     27   5.4  
SB_41195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 152 EARYMDCLEAYGL----ERGKVKCAHLFGDYHEC 241
           +A Y DCL +YGL    +R  V C +LF     C
Sbjct: 800 QANYQDCLASYGLQSLKDRRGVFCLNLFSSISTC 833


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 98  DVTGGMISHQLLGRCQKEEARYMDCLEAYGLERGKVK 208
           DV   M+ HQL       +  Y  CLE Y +E GK K
Sbjct: 283 DVPWNMLRHQLAYVAPDGKVDYRSCLEQYAIE-GKTK 318


>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 167 DCLEAYGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQISQGKLTGD 328
           DC   +  + GKV+CAH    Y  C+   K+      I  +      +G+  GD
Sbjct: 362 DCSTCFCKKNGKVECAHQMCGYPVCANPIKETGHCCPICRDEIVDEGRGEDGGD 415


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +2

Query: 152 EARYMDCLEAYGLE-----RGKVKCAHLFGDYHEC 241
           +A Y DCL +YGL+     RG++ C +LF     C
Sbjct: 726 QANYQDCLASYGLQSLKDRRGEL-CLNLFSSISTC 759


>SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)
          Length = 199

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  VKLRKHHVFVAVLSLTVYGCY-WWHDFPPTSGSLPERG 153
           V+ RK+ V   VL L  +    WW D   TSG L E G
Sbjct: 59  VETRKYQVVNEVLWLDYFTAQIWWIDLDLTSGKLLETG 96


>SB_41195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 227 RRTNERT*PFLVPNHKLLDNPCIWLPLSGS 138
           RR  +RT P  + +H  LD P  WL   G+
Sbjct: 34  RRRTDRTDPTRILDHYALDPPTHWLVFQGA 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,511
Number of Sequences: 59808
Number of extensions: 276786
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)