Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b03
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.13
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 31 0.18
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 29 0.94
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.2
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 2.2
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 27 2.9
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 26 5.0
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 5.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.6
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 8.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.8
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.13
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Frame = +2
Query: 155 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASR 334
P P E P V+ P P +P+ +P + E P + + P V P +
Sbjct: 517 PPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQ 576
Query: 335 IINQPVITETPC---NSVAPRVPSATIITDCTPTVCKNLANTIQLMIICNLLQNTKGGPE 505
PV E P VAP VP A + P V +A + + + P
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVPQ--PPVAP-VAPEVPSVPQRPAVPVVPEAPS 633
Query: 506 LALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKA 613
+ A+PV+ EV + P P +P+V P A
Sbjct: 634 VPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPA 669
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 185 PRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQP---VI 355
P+ P + E P + P +P + P+ +P V E+P + + + P +
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSV 574
Query: 356 TETPCNSVAPRVPS 397
+ P VAP VPS
Sbjct: 575 PQPPVAPVAPEVPS 588
Score = 25.4 bits (53), Expect = 8.8
Identities = 22/92 (23%), Positives = 35/92 (38%)
Frame = +2
Query: 155 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASR 334
P P E P V P P P+ P + E P + + P P + +
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQ 651
Query: 335 IINQPVITETPCNSVAPRVPSATIITDCTPTV 430
PV+ E P P+ P+A ++ + P+V
Sbjct: 652 RPAVPVVPEAPS---VPQPPAAPVVPE-VPSV 679
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.18
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = -1
Query: 555 GEVKTSFSTGDANCKANSGPPFVF---CSKLQMIINWIVLAKFLQTVGVQSVIIVADGTL 385
G +K+ FST + + + N P F ++L ++I ++L+ FL + Q+VI A T+
Sbjct: 59 GSLKSRFSTHEISSEKNDSPDFTLVLPSNRLYIVIPGLMLSIFLAALD-QTVITTAIPTI 117
Query: 384 GATLLHGVS 358
A L G S
Sbjct: 118 VANLDGGSS 126
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 28.7 bits (61), Expect = 0.94
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +2
Query: 338 INQPVITET---PCNSVAPRVPSATIITDCTPTVCKNLANTIQLMIICNLLQNTKGGPEL 508
I PV+T C ++A + S I D VC + T+Q M I +GGP+
Sbjct: 29 IRDPVLTSEGIEQCEALAKELESKQIPID--GIVCSPMRRTLQTMEIALKKYLAEGGPDK 86
Query: 509 ALQLASPVLNEV 544
SP EV
Sbjct: 87 VPVYISPFFQEV 98
>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 198
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +2
Query: 26 HLSINYLI*RKNMSKFVLLLISMTIFDKTAKSQYLRQQPYSITPRQMPEYIEGPRVYDGP 205
H+ I +I +K +L L+S + + KS+ + Y + P+YI G +YD
Sbjct: 8 HVYIAKIIGKKGEGDKILDLLSK-VNEHVLKSEPFTKTYYFARDAKNPDYIFGLELYDSK 66
Query: 206 RIFEGPRFYDSPRL 247
+ E +P L
Sbjct: 67 EVLENSHKTSNPFL 80
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 326 ASRIINQPVITETPCNSVAPRVPSATIITDCTPTVCKNLANT-IQLMIICNLL 481
+S + N PV T TP + R PS ++ + +++A++ Q+ II N L
Sbjct: 310 SSSVTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDESVASSNFQVPIISNPL 362
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.5 bits (58), Expect = 2.2
Identities = 37/143 (25%), Positives = 63/143 (44%)
Frame = +2
Query: 254 SPRLIEGPRLIESPRVIESPRIYEASRIINQPVITETPCNSVAPRVPSATIITDCTPTVC 433
SP+ I+ P IE+P IESP + + + T + ++P V T +T TP
Sbjct: 106 SPQFIDKPSNIETPVKIESPHVSQNN--------TFQSYSELSPNV--ETSLTMKTPPA- 154
Query: 434 KNLANTIQLMIICNLLQNTKGGPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKA 613
A+T + + +A+ ++ + + TSP FS S N SP+
Sbjct: 155 --HASTPKF--------RSHKSHRVAVPMSFMDSSALHTSPAFSERLKLLSSSNNFSPQL 204
Query: 614 VSPSMVPNFITAAFNSPVSNAQP 682
SP + T+A +SP+ + +P
Sbjct: 205 RSPKISHRLQTSATSSPLQHKRP 227
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 236 SPRLIESPRLIEGPRLIESPRVIES 310
SP+ I+ P IE P IESP V ++
Sbjct: 106 SPQFIDKPSNIETPVKIESPHVSQN 130
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 365 PCNSVAPRVPSATIITDCTPTVCKNLANTIQLMIICNLLQNTKGGPELALQLASPVLNE 541
P NS+ R T T + C N+A I + + +LLQ+ G A+PVLNE
Sbjct: 508 PSNSLVDRTLDQTCTV--TRSGCANIATAIAVELFVSLLQHPNGH-------AAPVLNE 557
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 381 ATLLHGVSVITGWLMILDASY 319
AT LHG+ +I G +++L A+Y
Sbjct: 212 ATGLHGIHIIVGTILLLVATY 232
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 269 EGPRLIESPRVIE-SPRIYEASRIINQPVITETPCNSVAPRVPSATIITDCTPTVCKNLA 445
+GP +I SP+VI S + +A + ++ + +P +S +P S ++D TV ++
Sbjct: 269 KGPNIISSPQVINASSPVRKAGKKKSKKALPTSPLSSSSPDA-SYNSVSDSFHTVAASVP 327
Query: 446 NTI 454
++
Sbjct: 328 ESL 330
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 537 FSTGDANCKANSGPPFVFCSKLQMIINWIVLAKFLQTVGVQSVIIVADG 391
F+ D NSG P + S++ +NW V F+ + V V +G
Sbjct: 426 FTGDDTKIMLNSGAPPLKRSRITRNLNWNVYLNFIILFSMCFVCAVVEG 474
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 371 NSVAPRVPSATIITDCTPTVCKNLAN 448
N VAP +P+ T + + T V +NL N
Sbjct: 1660 NLVAPMIPNNTELNEDTSAVSRNLEN 1685
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 406 NYGLHSDRLQELGQHNPVNDHL*FTT 483
N +H +RLQE + ++D+ +TT
Sbjct: 289 NNKMHKERLQEFSSYKNIDDYYDYTT 314
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 59 NMSKFVLLLISMTI--FDKTAKSQYLRQQPYSITPRQMPEY 175
N+ + V+LL+S+ F+K + LR P SIT + Y
Sbjct: 787 NLEESVMLLLSLATSDFEKVDLTSLLRSDPISITVELLQLY 827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,866
Number of Sequences: 5004
Number of extensions: 60675
Number of successful extensions: 199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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