Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b03
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 30 1.7
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 3.0
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 29 3.0
03_04_0029 - 16610182-16611753 29 4.0
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 5.2
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049... 28 6.9
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 28 9.2
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 28 9.2
03_02_0707 + 10569261-10571276 28 9.2
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 9.2
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 180 KGPEFTTDQGSSRALDSTIVPGSSRVRGSLRALGSS 287
+G T GSSR + + PGSS +G +R G+S
Sbjct: 107 RGRSLTNGAGSSRGMRGFVPPGSSSGQGGVRGHGAS 142
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +2
Query: 167 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 346
P + ++ P + + P +S ++I P +S ++I P ++ +II++
Sbjct: 334 PIETQSEKIISEPIDTQSEKIISEPIETQSEKIISEPIDAQSEKIISEPIEAQSEKIISE 393
Query: 347 PVITET 364
P+ T+T
Sbjct: 394 PIDTQT 399
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 457 LDCVGQVLADGRSAVRNYRGRWNPWSDTVAWCLGYHRLVDDP 332
LD VG V ADG + + +W+P D A L+ DP
Sbjct: 50 LDLVGYVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 91
>03_04_0029 - 16610182-16611753
Length = 523
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 563 SCGCPNPFSPNVVSPKAVSPSMVPNFITAAFNSPVSNA 676
S P SP++ SP A SPS VP+ + SP A
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPAHRA 107
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 298 SRALDEPRALNEPRTLDEPGTIVESRALEDP 206
+R +D PR ++ PR +D P I R ++ P
Sbjct: 270 ARTIDPPRPIDPPRPIDPPRPIDPPRPIDPP 300
>03_05_1142 -
30703333-30703469,30704058-30704205,30704893-30704963,
30705189-30705285,30705371-30705562,30705639-30705977
Length = 327
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -3
Query: 223 RALEDPWSVVNSGPFDV---FRHLSWSYAVGLLPEILRFCCL-IKYSHRNQQQNKL 68
RAL+D V P +V +R + A+GLLPE FC I+ N++ KL
Sbjct: 96 RALDDAARAVQLSPSNVKAYYRAAKAAIALGLLPEAAAFCRRGIEQDPANEELKKL 151
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 155 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESP 259
P Q+ Y RVYD R + PR SPRL SP
Sbjct: 3 PNQLRPYEYTTRVYD-VRHDQTPRLVSSPRLASSP 36
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 476 LLQNTKGGPELALQLASPVLNEVFTSPVFSCGC-PNPFSPNVVS----PKAVSP 622
+++ K G +L + P N P+F+ C PNP PNVV P AV+P
Sbjct: 283 VIRRKKPGAKLEVYAFQPRHNH----PLFATSCMPNPLQPNVVHWTTLPDAVTP 332
>03_02_0707 + 10569261-10571276
Length = 671
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/71 (19%), Positives = 29/71 (40%)
Frame = +2
Query: 464 IICNLLQNTKGGPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSMVPNFI 643
++CN+ + P+ + ++ + V +CGCP+ S A S + P +
Sbjct: 420 VVCNITTSKGAKPKCCVTFSAYYNDSVIPCNTCACGCPSNQRGPTCSTTAQSMLLPPEAL 479
Query: 644 TAAFNSPVSNA 676
F++ A
Sbjct: 480 LVPFDNRTQKA 490
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 485 NTKGGPELALQLASPV-LNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSMVPNFITAAFNS 661
++ P A Q A+P N+ P S +P +P +SP +++P P+ + +S
Sbjct: 2 SSPSSPPPANQTATPPPANQTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSS 61
Query: 662 PVSNAQPTCSLLS 700
P + A + S L+
Sbjct: 62 PAAAAAASSSGLT 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,119
Number of Sequences: 37544
Number of extensions: 406346
Number of successful extensions: 1195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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