Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b03
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical...    37   0.013
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    30   1.5  
U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeo...    29   2.7  
AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protei...    29   2.7  
AF023470-1|AAB86814.1|  183|Caenorhabditis elegans CEH-21 protein.     29   2.7  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   3.5  
Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical
           protein Y52B11A.7 protein.
          Length = 529

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 506 LALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSMV-PNFITAAFNSPVSNAQP 682
           L+ Q+ +P++   F    F    P+  SP ++SP A+SPS++ P+F+TA   SP +   P
Sbjct: 453 LSPQVMTPIILSPFALSPFIL-TPSALSPLILSPFALSPSILSPSFVTAVIMSPYA-LSP 510

Query: 683 TCSLLSNLMSLFGN 724
           +      ++S+F +
Sbjct: 511 SILSPPTMISVFAS 524


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 467 ICNLLQNTKG-GPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSM---VP 634
           I +LLQ T   G ++  + A P +  V   P F+   PNPF+P    PK+VSP+    VP
Sbjct: 35  IASLLQKTNTTGEDVKSKDAQPSVTPV-PPPTFN-PVPNPFAPR---PKSVSPNPHPDVP 89

Query: 635 NFITAAFNSPVSNAQ 679
                A ++P   ++
Sbjct: 90  AVTVGALSAPADKSE 104


>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 286 DEPRALNEPRTLDEPGTIVESRALEDPWSVVNSGPF 179
           +EPR   E + L EPG   E+  LE P  + NS  F
Sbjct: 296 EEPREYEEDKKLKEPGEHEETEKLEKPNKLENSKKF 331


>U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeobox
           protein 21 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 274 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 104
           AL E       GT+ +   +  PWSV+ +G     R  +W   +GL P++ R  C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368


>AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protein
           protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 274 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 104
           AL E       GT+ +   +  PWSV+ +G     R  +W   +GL P++ R  C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368


>AF023470-1|AAB86814.1|  183|Caenorhabditis elegans CEH-21 protein.
          Length = 183

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 274 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 104
           AL E       GT+ +   +  PWSV+ +G     R  +W   +GL P++ R  C +
Sbjct: 3   ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 56


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/78 (25%), Positives = 24/78 (30%)
 Frame = +2

Query: 152 TPRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEAS 331
           T  + P   EG      P   E     + P   E P    G    E     E P   E S
Sbjct: 491 TTTEKPVITEGSTTNKQPTTSEHESTTEVPTTTEEPTTTTGQHKTEKAITTEEPTTTEES 550

Query: 332 RIINQPVITETPCNSVAP 385
               +   TE P N+  P
Sbjct: 551 STTEEVTTTEEPANTGNP 568


>Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical
           protein R05H5.2 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 206 RIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRI-YEASRIINQPVITE 361
           RIF      D P++I+ P   E P   E       PR     +R++ +P  TE
Sbjct: 318 RIFSSEHLLDEPKMIDVPSGYERPTGAEETSTPRQPRARTPRARLLFEPCFTE 370


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 296 RVIESPRIYEASRIINQPVITETPCNSVAPRVPSATII 409
           +VIESP +Y    + + P+  +    ++ P+VP +T++
Sbjct: 412 KVIESPFLYLTLDLPSAPLYRDVQLQNIIPQVPLSTLL 449


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 518 LASPVLNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSMV-PNFITAAFNSP 664
           +A  VL+    SP    G PN  +P ++SP  +SP ++ P F++A   +P
Sbjct: 749 MAPLVLSPFALSPFI--GIPNALTPLILSPFVLSPLVLSPPFVSAFVLNP 796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,309,114
Number of Sequences: 27780
Number of extensions: 352019
Number of successful extensions: 1182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)