Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b03
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.58 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.1  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 512 LQLASPVLNEVFTSPVFSCGCPNP---FSPNVVSPKAVSPSMVPNFITAAFNSP 664
           L L +P +N    SP+ SC CP+     S  ++  + VS ++VP   T   N P
Sbjct: 46  LCLPAPRINS--KSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPT--TQEINKP 95


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 391 NPWSDTVAWCLGYHRLVDDP 332
           NPW+  + + +G HR++  P
Sbjct: 396 NPWTKKLEFVVGQHRILKGP 415


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 391 NPWSDTVAWCLGYHRLVDDP 332
           NPW+  + + +G HR++  P
Sbjct: 102 NPWTKKLEFVVGQHRILKGP 121


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 512 LQLASPVLNEVFTSPVFSCGCPN 580
           L L +P +N    SP+ SC CP+
Sbjct: 46  LCLPAPRINS--KSPLLSCACPD 66


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 RIFEGPRFYDSPRLIESP 259
           RIF GP++    +LIE P
Sbjct: 517 RIFIGPKYDSHHKLIEIP 534


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 RIFEGPRFYDSPRLIESP 259
           RIF GP++    +LIE P
Sbjct: 517 RIFIGPKYDSHHKLIEIP 534


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 319 YPRGFYHSRALDEPRALNEPRTLDEPGTIVESRALEDPW 203
           YP   + +   +    +N+  T++    I  S AL+ PW
Sbjct: 131 YPSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPW 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,465
Number of Sequences: 438
Number of extensions: 4513
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)