Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b01
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 237 6e-64
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 237 1e-63
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 2.4
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 4.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 5.5
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 5.5
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 25 5.5
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 5.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 9.6
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 25 9.6
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 25 9.6
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 237 bits (581), Expect = 6e-64
Identities = 113/154 (73%), Positives = 131/154 (85%), Gaps = 1/154 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLA 545
S DAPMFVVGVNLE ++PS KVISNASCTTNCLA
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLA 158
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 237 bits (579), Expect = 1e-63
Identities = 112/154 (72%), Positives = 131/154 (85%), Gaps = 1/154 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLA 545
S DAPM+VVGVN E ++PS KVISNASCTTNCLA
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLA 158
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 293 NFVTVNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 138
+F + N+ESIL+L L + + E I++IV+ +D R HLS L +
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 452 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*E-NGNFVTVN 276
+ +G +N +S + C +C G + ++ +P F +R+P NGN T+
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGFR--QQMRMPCNACNGNGRTIK 210
Query: 275 NK 270
+K
Sbjct: 211 HK 212
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 296 GNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKTDERVIYSDHL-SSLFNRSTEHQT 120
GN +VN+K+ +N+N KTA ++H+ E ++ L SSLF+ + ++
Sbjct: 519 GNIFSVNSKKHSVNINA--KTAAN----NGLSHLQNFSEELLKKRKLFSSLFSNNVSYKK 572
Query: 119 ANAAK 105
+ K
Sbjct: 573 SKKLK 577
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 102 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 212
GF RI +R EKG QVV D I + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 67 LHLVLRLRGGMQIFVK 82
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +3
Query: 69 LADNMSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLD------YMVYLFKYDSTH 230
+ D+ ++ +N F +G+L++ + ++ + ND ++ YM Y+F+ +
Sbjct: 515 VGDHTGQLWLNVFDDVGKLIMHKTADE-LNDLQENDENAFMNCMAEACYMPYIFQCRAKQ 573
Query: 231 GRFKGSVEVQDGFLVVN 281
FKG + V+ + +N
Sbjct: 574 DNFKGEMRVRYTVMSIN 590
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 397 DALSVVVKTPVDSTTYSAPAFPHGMALGSLSEKTAIL 287
D S +V TP DSTTY+ P+ L + ++L
Sbjct: 84 DDNSSLVNTPRDSTTYAETNSPNTEKLAGRDDDRSLL 120
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNKFSITCR*HVKN 91
LHLVL +RGGG+ K + T +K+
Sbjct: 67 LHLVLRLRGGGKKRKKKTYTTPKKIKH 93
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 11 LHLVLSVRGGGQLFNKFSITCR*HVKN 91
LHLVL +RGGG+ K + T +K+
Sbjct: 67 LHLVLRLRGGGKKRKKKTYTTPKKIKH 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,383
Number of Sequences: 5004
Number of extensions: 50701
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -