Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b01
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             191   3e-49
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   0.81 
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   3.3  
SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                27   7.6  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  191 bits (466), Expect = 3e-49
 Identities = 86/115 (74%), Positives = 100/115 (86%)
 Frame = +3

Query: 201  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 380
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 381  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLA 545
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLA
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLA 931


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 43  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 165
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 439 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 525
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 436 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 302
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -3

Query: 365 RLYNIFSPSFSPWNGLRVPF*ENGNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKT 186
           R  N+    F  W GLRV   +  N   V     I N  T L      +I E +   VK 
Sbjct: 6   RAANVTKIPFDGWVGLRVKLKDAANNHEVLVPFLIANQTTDLPIIGFNVIEEIVKGYVKD 65

Query: 185 DERVIYSDHLSSLFNRSTEHQT 120
           ++  + S   SSL++  +++ T
Sbjct: 66  EDNELNSALASSLYDVESDNVT 87


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +1

Query: 136  LLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFR--MDSLLLTVTKLPFSQK 309
            L+L+      L +T SS LT   +     P   +L +V+ F   +  L  +VT+LP S K
Sbjct: 1174 LILETSPYLQLSVTQSSQLTA-SVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVK 1232

Query: 310  GTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 405
              L         +  L + +  LP+  KHL T
Sbjct: 1233 HLLTSVMHLHASVTHLPASVTQLPVSAKHLPT 1264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,283
Number of Sequences: 59808
Number of extensions: 366502
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)