Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a19
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.7  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    26   3.6  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   4.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.3  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -1

Query: 409  VDESSKFMFVLALGVLLYGKLFPQVRQFSLESLY-HCTDQMTLFRVAFGAFSSKRLGDSF 233
            V ESS+ +  L    L     FP  R+  + +L  HC D   +  V F   S K L D F
Sbjct: 906  VSESSEALISLVFNNLQTINRFPGHRERYVSTLISHCGDLFAINHVCFVRNSLKYLLDDF 965

Query: 232  LK 227
             K
Sbjct: 966  TK 967


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 191 LDQGPCTAEGTEFKKRIPEALRTKCAKCNPKQRHL---IRTVVKAFQTKLPDLWEELAIK 361
           L QG CT +   FK++I + L  K  + N +  H+       VK  + ++ +L  E+A+K
Sbjct: 308 LIQGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYENDLTVKKLKRRISEL--EMAVK 365

Query: 362 E 364
           E
Sbjct: 366 E 366


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 278  PKQRHLIRTVVKAFQTKLPDLWEELAIKED 367
            P    LI++ ++ +Q +LP++W+++ +  D
Sbjct: 2797 PTNVQLIKSALQVWQERLPNVWDDINLWRD 2826


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 200 GPCTAEGTEFKKRIPEALRTKCAKCNPKQRHLIRTVVKAFQTKLP---DLWEELAIKEDP 370
           G   A G E+     E  R + A    ++RH+ R +  +F+T LP    + +E  + E+ 
Sbjct: 56  GSTPAGGAEWCSEALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKPSGILKEQTVNEE- 114

Query: 371 KGQYKH 388
           +G  +H
Sbjct: 115 EGNSRH 120


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -1

Query: 487 IQSIMAIFHSELCYLVSCRHSSLVHGVDESSKFMFVLALGVLLYGKLFPQVRQFSLESLY 308
           ++ I A  H  L    SC +  + +   E +KF + +   + +  K F + R  +L++L 
Sbjct: 15  VEEIEAEIHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRA-ALDTLR 73

Query: 307 HCTDQMT--LFRVAFGAFSS 254
            C  +++     VAFG+  S
Sbjct: 74  LCLKRISPDAELVAFGSLES 93


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -1

Query: 310 YHCTDQMTLFRVAFGAFSSKRLGDSFLK--FCSFGGTGALVEEALGIVLQEAQVAHQLLD 137
           +H T++++  +   G F +K      L     +F   G  ++EAL ++LQ  ++  +   
Sbjct: 589 FHSTNRLS--KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRLLLQSFRLPGESQL 646

Query: 136 VKIIILTAVVFFRSANND 83
           ++ ++ T   ++ SAN D
Sbjct: 647 IERVLETFSHYYMSANPD 664


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = -2

Query: 378 WPLGSSFMASSSHRSGSLVWKAFTTVRIR*RCFGLHLAHLVLSASGILFLNSVPSAVQGP 199
           W     ++ S S     ++W AFT  ++R    G  ++       G+ F+   P      
Sbjct: 263 WSPDDRYLLSCSCDKSVILWDAFTGEKLRDYKHGFSVSCCCWLPDGLSFITGSPDCHITH 322

Query: 198 WS 193
           WS
Sbjct: 323 WS 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,875
Number of Sequences: 5004
Number of extensions: 48281
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)