Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a19
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     31   0.92 
01_05_0645 - 23899579-23904483                                         30   1.2  
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     29   3.7  
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013     28   4.9  
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    28   4.9  
03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995     28   6.5  
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    27   8.6  

>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
 Frame = +2

Query: 119 QYDNFDVEQLVGNLRLL-KNYAKCFLDQGPCTAEGTEFKKRIPEALRTKCAKCNPKQRHL 295
           Q   +D+E    N+ +  + Y K      PC    T      P+ L T   + NP  RH 
Sbjct: 126 QTSGYDLEPGSENISVTYRVYYKAMTTLAPCAKHYT------PKGLTT-LLQTNPNNRHT 178

Query: 296 IRTVVKAFQTKLPDLWEELAIKEDPKGQYKHEFTAFINAMD 418
           I   +K  +  LP+ W  L+   +PK   + E  + I   D
Sbjct: 179 IPKTLKWDEITLPEKW-VLSQAVEPKSMDQSEVESLIETPD 218


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 230 KKRIPEALRTKCAKCNPKQRHLIRTVVKAFQTKLPDLWEELAIKEDPKGQYKHEFTAFIN 409
           K   P+ L T   + NP  RH I   +K  +  LP+ W  L+   +PK   + E  + I 
Sbjct: 9   KHYTPKGLTT-LLQTNPNNRHTIPKTLKWDEITLPEKW-VLSQAVEPKSMDQSEVESLIE 66

Query: 410 AMD 418
            +D
Sbjct: 67  TLD 69


>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 230 KKRIPEALRTKCAKCNPKQRHLIRTVVKAFQTKLPDLWEELAIKEDPKGQYKHEFTAFIN 409
           K   P+ L T   + NP  RH I   +K  +  LP+ W  L+   +PK   + E  + I 
Sbjct: 9   KHYTPKGLTT-LLQTNPNNRHTIPKTLKWDEITLPEKW-VLSQAVEPKSMDQSEVESLIE 66

Query: 410 AMD 418
             D
Sbjct: 67  TPD 69


>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
          Length = 829

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 374 PWGPPLWQALPTG-QAV*SGKPLPLYGSDDAVSGCIWRI 261
           P GPPL  AL    +A+ SG  LPLY +   +S  +WR+
Sbjct: 293 PDGPPLGTALGEKIEAMVSGLILPLYYAMTGLSTDVWRM 331


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 176 SSSRGASCPPAARRQNYHIDCCSILPVGKQRP 81
           ++SR A   PAAR    H+ CCS       +P
Sbjct: 17  AASRAAKAAPAARPLRPHVRCCSPAAASTTKP 48


>03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995
          Length = 173

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 86  VVCRPEEYYSSQYDNFDVEQLVGNLRLLKNYAKCFLDQGPCTAEGTEFKKRI 241
           V   P   Y S +   D+E  VGN  +    +  FLD  PC A     ++ +
Sbjct: 118 VAMAPLYVYRSVFAGGDIEHSVGNEEIYGVLSLVFLDVHPCPASQVRARRAL 169


>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 473 HDTLNGFFEANVR*NVLLQHHISILKDIELRMH 571
           +D +N FFEA+ R N+ L   I   +D+  RMH
Sbjct: 406 NDKINFFFEASHRSNMDLVWKICAWRDLMARMH 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,495
Number of Sequences: 37544
Number of extensions: 321406
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)