Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a19
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-1|CAA99921.1|  183|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AL132948-16|CAD31817.1|  319|Caenorhabditis elegans Hypothetical...    31   0.62 
AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z71263-5|CAA95824.1|  356|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF291847-1|AAK55964.1|  356|Caenorhabditis elegans heterotrimeri...    27   7.7  

>Z75550-1|CAA99921.1|  183|Caenorhabditis elegans Hypothetical
           protein T22C1.2 protein.
          Length = 183

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 189 SSTKAPVPPKEQNLRKESPRRLELNAPNATRNSVI*SVQW*RLSRLNCLTCGKSLP*RRT 368
           SST  P PP ++N  K   R+ +    N+ + S++ +  W  +S+     CG ++  R  
Sbjct: 3   SSTSTPAPPPKKN--KPEGRKADNQILNSYQKSIVRNA-WRHMSQKGPSNCGSTITRRMM 59

Query: 369 PRANTNMNLLLSST 410
            R +T  ++L  ST
Sbjct: 60  ARKSTIGDILDRST 73


>AL132948-16|CAD31817.1|  319|Caenorhabditis elegans Hypothetical
           protein Y39B6A.19 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 496 KEPIQSIMAIFHSELCYLVSCRHSSLVH-GVDESSKFMFVLALGVLLYGKLFPQVRQFSL 320
           +EP   +  + +  L +L +  H  L+H GV  +S  +FV A+   ++  +  +     L
Sbjct: 163 REPSHKLRGLLNQRLGHLFTVNHIQLIHVGVVFASLLLFVFAIPAWVFSSI--ETDWSYL 220

Query: 319 ESLYHCTDQMT 287
           ++ Y+C   +T
Sbjct: 221 DAFYYCFVSLT 231


>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 272 CNPKQRHLIRTVVKAFQTKLPDLWEELAIKEDPKGQYKHEF 394
           C    RH    ++K+ + +L  +W  L  K+  +  +KHE+
Sbjct: 75  CRGTPRHFDENLIKSIEDRLVVVWPNLYPKKTIQSFWKHEY 115


>Z71263-5|CAA95824.1|  356|Caenorhabditis elegans Hypothetical
           protein F52A8.2 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 387 CLYWPLGSSFMASSSHRSGSLVWKAFTT 304
           C+ W L    + SSS     +VW  FTT
Sbjct: 73  CMDWSLDKRHIVSSSQDGKVIVWDGFTT 100


>AF291847-1|AAK55964.1|  356|Caenorhabditis elegans heterotrimeric G
           protein beta subunit2 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 387 CLYWPLGSSFMASSSHRSGSLVWKAFTT 304
           C+ W L    + SSS     +VW  FTT
Sbjct: 73  CMDWSLDKRHIVSSSQDGKVIVWDGFTT 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,248
Number of Sequences: 27780
Number of extensions: 279073
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)