Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a19
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21790.1 68417.m03152 transmembrane protein-related (TOM1) co...    29   2.4  
At5g09210.1 68418.m01043 hypothetical protein                          28   4.1  
At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    28   5.4  
At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone...    27   9.5  
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    27   9.5  

>At4g21790.1 68417.m03152 transmembrane protein-related (TOM1)
           contains some similarity to transmembrane protein TOM3
           GI:15425641 from [Arabidopsis thaliana]; identical to
           cDNA TOM1 GI:9967414
          Length = 291

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 385 FVLALGVLLY-GKLFPQVRQFSLES 314
           F+ ALG LLY G+LF  +R+F +ES
Sbjct: 184 FIAALGFLLYGGRLFFMLRRFPIES 208


>At5g09210.1 68418.m01043 hypothetical protein
          Length = 603

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 379 LALGVLLYGKLFPQVRQFSLESLYH 305
           LAL  LL+GK+ P VR  + ES  H
Sbjct: 498 LALSDLLFGKVLPHVRSIASESNIH 522


>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 464 KYCHDTLNGFFEANVR*NVL-LQHHISILKDIELRMHIYVNLLNK 595
           +Y  D  N  FE NV+  +  L  H  ++KD  LR   YVN +++
Sbjct: 285 RYLDDPKNIHFETNVKNRLYELLVHAQLVKDYCLRFGDYVNYIDR 329


>At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone
           isomerase (CHI) identical to SP|P41088
          Length = 246

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 418 VHGVDESSKFMFVLALGVLLYGKLFPQVR-QFSLESLYHCTDQMTLFR-VAFGAF 260
           V G+D   KF+    +GV L G   P +  ++  ++    T+ +  FR +  GAF
Sbjct: 46  VRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAF 100


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 253 KRLGDSFLKFCSFGGTGALVEEALGIVLQEAQVAHQL 143
           K LGD   K  S G +G L E  L  +LQE +   QL
Sbjct: 375 KVLGDLQEKLSSMGSSGILAEHQLQALLQEHKGQSQL 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,568,354
Number of Sequences: 28952
Number of extensions: 257913
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)