Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a17
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14040.1 68417.m02169 selenium-binding protein, putative cont...    27   8.6  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    27   8.6  

>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 228 TFSSA-HRLHSPFLSDEENKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLK 404
           TFSS  HRL  P++ DE +   +  C++ +G        + + G +  +   +   TD K
Sbjct: 69  TFSSVIHRLKMPYIGDELHHTGWNSCSSCHGDASADRRYLVLPGLISGRIYAIDTKTDPK 128

Query: 405 KYIKTAILEP 434
                 ++EP
Sbjct: 129 APSLYKVVEP 138


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 180 NYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVY 293
           N   SS   VS +  +T SS HR    F+S  +++  Y
Sbjct: 600 NIAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQPTY 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,025,020
Number of Sequences: 28952
Number of extensions: 279504
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)