Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a14
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    33   0.029
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   4.4  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -1

Query: 480 LYRV*RYRLCPQSLSQ*YALSHLINSVSIMKWVL*LTLRVCFYNPSLKK 334
           L+ + RY L     S  YAL+  I+  +   W+  LTLR+CF N  L++
Sbjct: 618 LFHLMRYTLTGVRRSVVYALTKFISVQTSCSWITGLTLRLCFQNVLLEQ 666


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -3

Query: 454 MSTIALAVIRPVPPNKFSQHYEMGALTNTKSMFLQSIIKKNYRNIHRIANLVTMIPLILT 275
           + T+    ++P+P  +    Y +  + +T  +  Q + ++      RIA+L+  IPLI+ 
Sbjct: 292 IETVLSIKLQPIPVQETRVSYSI--IDDTLGITYQYMARERLHMRLRIAHLLISIPLIIG 349

Query: 274 VLVRI 260
           V V I
Sbjct: 350 VHVAI 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,036
Number of Sequences: 5004
Number of extensions: 50234
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)