Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a11
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 245 5e-66
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 243 1e-65
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.56
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 0.98
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.0
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 5.2
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 5.2
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 5.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 9.1
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 9.1
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 25 9.1
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.1
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 245 bits (599), Expect = 5e-66
Identities = 121/175 (69%), Positives = 145/175 (82%)
Frame = +1
Query: 109 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 288
+ RE++VY AKLAEQAERY+EMVE MK VA N ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59
Query: 289 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLGKYLIPSSQTGESK 468
SWRIISSIEQKEE++G + +I+ YR ++E EL DIC D+L VL K+LIP++ TGESK
Sbjct: 60 SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119
Query: 469 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGL 633
VFYYKMKGDY+RYLAEF G KEAA++SL AYKAASDIA+ ELPPT P+RLGL
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGL 174
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 243 bits (595), Expect = 1e-65
Identities = 121/175 (69%), Positives = 143/175 (81%)
Frame = +1
Query: 109 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 288
+ RED VY AKLAEQAERY+ MVE MK+VAS +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60
Query: 289 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLGKYLIPSSQTGESK 468
SWRI+SSIEQKEE+KG ++ +I+ YR ++E+EL IC DIL VL K+LIP++ + ESK
Sbjct: 61 SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120
Query: 469 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGL 633
VFYYKMKGDY+RYLAEFA G R+ +A+ SL YKAAS+IA EL PTHPIRLGL
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGL 175
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.56
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 124 NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII 303
N + +A+Q Y+E + + N R +S N NL +A K I + +
Sbjct: 779 NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831
Query: 304 SSIEQKEETKGAEDKLNMIRAYRSQ 378
+ +EET ++ L ++R YR +
Sbjct: 832 NEETTREETPSSDKVLRIVRLYRDK 856
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 28.3 bits (60), Expect = 0.98
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +1
Query: 97 SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 276
SST S N ++ Q+E Y ++ + + + ++SD E +E R V +N +
Sbjct: 45 SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103
Query: 277 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 396
+S +SS ET+ + + L + S +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 635 ASPRRMGWVGGSSVMAMSEAALYATSEFSAASLRSLPVA-NSARYRW*SPFIL**KTFDS 459
+S +GW S +MS++ + ++ RSL A N Y W SPF TF+
Sbjct: 244 SSDLHLGWDHTVSKESMSQSIAEVLNPYNKGVSRSLNDATNMETYHW-SPFPPQFSTFND 302
Query: 458 PVCELGMRYLPRT 420
L + Y P++
Sbjct: 303 NALRLRIYYKPKS 315
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 419 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 309
P ++E + +S S+W+ A ++ + + P V FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 226 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 104
S+H + + H P F S QLTLL + YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 261 QERDRRPPRLLADHLLHRTEGRNKRRRRQIEHDQS 365
Q RD P R + HR R + RR +EH+++
Sbjct: 53 QRRDYSPARRRDRYERHRESVREESPRRPVEHERN 87
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 382 EKELRDICSDILGVLGKYLIPSSQTGESKVFYY 480
E+ELRD+ G+ YL +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 127 VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 285
+YK KL E R DE+V MKN+ +N + +EL + ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 427 GKYLIPSSQTGESKVFYYKMKGDYHRYLAEFATGNDRKEAA 549
G +I + G+ + YY+ + D YL+EF + + ++ A
Sbjct: 279 GTKVIYLAGKGDGNIRYYEYENDVFHYLSEFKSVDPQRGIA 319
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 130 THYLPFPTLWMTNDFTLTKS 71
T+YL FP + ND+TL+ +
Sbjct: 455 TYYLEFPGRFSVNDYTLSSN 474
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 464 DSPVCELGMRYLPRTPRMSEQMSRSSFSTW 375
DSP +G R + + R + RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 118 EDNVYKAKLAEQAERYDEMVEAMKNVASRNV 210
ED++++ + +Q Y E +E K ++NV
Sbjct: 713 EDSMHEIAIKKQHSTYSEALEVAKKAGTKNV 743
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,943
Number of Sequences: 5004
Number of extensions: 42785
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -