Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a05
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 29 0.71
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 5.0
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 25 6.6
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 25 6.6
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 6.6
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 8.8
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 8.8
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 0.71
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 164 NEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRIKDVQV 343
N +P T + + +PPS L V S + ++ I S V GPS ++V V
Sbjct: 281 NALVPSYTTLVSQ--LPPSPCLTVSSGPLSTASS-IPSNCSCPSVKSSGPSYHAEQEVNV 337
Query: 344 NSVHRRVVAKLY--IPELKMKGNYKLSGQLLMLPMNGEGQFTAKYGDIDATVTI 499
NS + + + Y P+ + G+Y SG+ + +N ++AT I
Sbjct: 338 NSYNGGIPSTSYNDTPQQSVTGSYN-SGETMSTYLNQTNTSGRSPNSMEATEQI 390
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 364 NTTVH*VHLDI-LNSHLRGPSDRNIRVRRSNRD 269
NTTV H+ L S LRGP +NI+ RD
Sbjct: 326 NTTVRISHISTELYSLLRGPDGKNIKELEEGRD 358
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 224 PLIVPSISI-QQSTGPITVTSSYS----DVTVRGPSKMRIKDVQVNSVH 355
P I P++S S +T SS++ T+R P MR + + VNS H
Sbjct: 90 PYISPTMSYTNHSPANLTRNSSFNHQHYSTTLRSPPSMRGRGIDVNSSH 138
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 65 ISLCEGDNNFINFGGFICPREEKALGKCLKDALNEYIPKLA 187
I+ G IN F P ++ A+G D Y+PK A
Sbjct: 274 IAFAAGPFKHINLTDFREPEDDDAMGSSAIDITGYYLPKYA 314
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 315 EGPRTVTSEYDEVTVMGPVDCWIEIDGTISGSDGGTPY 202
E P +VT+E + P DCW+ I G + PY
Sbjct: 67 ESPISVTAE-ELAKHCSPDDCWMAIRGKVYNVTAYLPY 103
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 199 GIWGSPIGAAYRSIDFYPAVNWSHH--GYFVVL*CY 300
G WG + +I Y NW H +F + CY
Sbjct: 347 GYWGRVVSILLNTILVYMVSNWKHRFPVFFPIFLCY 382
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 285 DEVTVMGPVDCWIEIDGTIS 226
DE++ GP W+ DGTI+
Sbjct: 239 DEISPAGPTHTWLVRDGTIT 258
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 149 LKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRI 328
+K +LN+ + + LPE S P P + + + T P+ +D+ + G +RI
Sbjct: 229 MKSSLNQALTLI--NLPEQPFSISSPTATPQLGVVKRTSPLRF--PLNDIWLSG---LRI 281
Query: 329 KDVQVNSV 352
D + S+
Sbjct: 282 VDPNIESI 289
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 8.8
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +2
Query: 182 LATGLPEYGVPPSEP-LIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRIKDV-QVNSVH 355
L T + + + PS+P ++VPS + S+ P+T S + P+ + ++ N+ H
Sbjct: 437 LGTSVNPHSLSPSQPPVVVPSNTTISSSPPLT---SPVKTSANIPNLLPTSELDSSNAPH 493
Query: 356 RRVVAKLYIPELKMKGNYKLSGQLLMLPMNGEGQFTAKYGD 478
+ A + ++K N + S ++ P N + T D
Sbjct: 494 SQSAATHDLNDVKSYYNTRSSHSVVPNPTNQKVSITGAAAD 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,534
Number of Sequences: 5004
Number of extensions: 53135
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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