Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a05
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 31 0.73
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66... 31 0.73
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 31 0.73
11_04_0216 - 14954047-14956098 30 1.7
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 30 1.7
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983... 29 3.0
03_05_0584 - 25839566-25840255 29 3.0
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178 29 3.9
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 5.2
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 28 6.8
07_01_0205 + 1481380-1481892 27 9.0
06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818 27 9.0
01_01_0096 + 737928-739894,740164-740221 27 9.0
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 106 WFYMSERRKGV--GEMSERRFERVYP*ISHRTAGIWGSPIGAAYRSIDFYPAVNWSHHGY 279
W Y R G G +S E + I H G P+ YR +D+Y +W + G
Sbjct: 212 WCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKGI 271
Query: 280 FVVL*CYGPRAL 315
+ YGP +L
Sbjct: 272 SL----YGPISL 279
>11_01_0088 -
662984-663024,663743-663774,664079-664503,665048-666006,
666661-666846,666942-667044,667141-667323,667514-667606,
668092-668274,669011-669031
Length = 741
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 106 WFYMSERRKGV--GEMSERRFERVYP*ISHRTAGIWGSPIGAAYRSIDFYPAVNWSHHGY 279
W Y R G G +S E + I H G P+ YR +D+Y +W + G
Sbjct: 120 WCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKGI 179
Query: 280 FVVL*CYGPRAL 315
+ YGP +L
Sbjct: 180 SL----YGPISL 187
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 137 LGKCLKDALNEYIPKLAT---GLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVR 307
+G C+ D + E +P++A GL G+ P + L S GP + + +
Sbjct: 281 IGPCM-DTVVEPLPEMAADGRGLEFRGIRPGDMLTCQGGSAMLGIGPAALRPNTVSSPIL 339
Query: 308 GPSKMRIKDV 337
GPSK+ +K V
Sbjct: 340 GPSKILVKKV 349
>11_04_0216 - 14954047-14956098
Length = 683
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 367 SQAVYSRAQDEGQLQVIWTAPHVANEWRRTVYCKIW 474
++ V+SR E L V +P EW+RT+ CK++
Sbjct: 515 ARRVHSRTSSEHLLVVGEGSPRKEKEWKRTLACKLY 550
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 335 VQVNSVHRRVVAKLYIPELKMKGNYKLSGQLLMLPMNGEGQF 460
V VH R V KLY P L G ++ G L LPM G ++
Sbjct: 552 VAEQEVHSRFV-KLYPPHLSAPGGGEMHGSELHLPMGGGAEW 592
>08_02_0519 -
18097509-18097726,18097803-18097967,18098095-18098305,
18099151-18099419,18100915-18101017
Length = 321
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 152 KDALNEYIPKLATGLPEYGVPPSEPLIVPSIS 247
K L+EY K T PEY V +E + P +S
Sbjct: 130 KSILHEYTTKTKTDQPEYSVTKTEGSVTPYVS 161
>03_05_0584 - 25839566-25840255
Length = 229
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 301 GPRALEDAN*GCPGELSAPSCCSQAVYSRAQDE 399
GPR D CP EL AP C+ A QD+
Sbjct: 144 GPRCEADVAGQCPSELRAPGGCNNACTVFKQDQ 176
>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
Length = 1122
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 119 PREEKALGKCLKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPI 271
P KA+G L+ NE K + ++G+P E ++P++ + P+
Sbjct: 384 PLAIKAIGSSLRGETNEETWKDVSESDQWGLPAEEDRVLPALKLSYDRMPV 434
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 173 IPKLATGLPEYGVPPS-EPLIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRIKD-VQVN 346
+P A P GVPP EP P+ T P S+Y D+ +R + + D V VN
Sbjct: 162 LPTSAPAPPLPGVPPELEPADFPTFL----TAPAAGRSAYLDLLLRQCQGLEVADHVLVN 217
Query: 347 SVH 355
S H
Sbjct: 218 SFH 220
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 173 IPKLATGLPEYGVPPSEPLIVPSISIQQSTGP 268
+P L G P YG+P S + +S ++TGP
Sbjct: 198 MPVLGHGFPPYGLPTSSAGALSLLSSARATGP 229
>07_01_0205 + 1481380-1481892
Length = 170
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 445 WRRTVYCKIWRY*CNSNNNI 504
WRRT Y R CN+NN I
Sbjct: 131 WRRTAYVGCARVACNTNNGI 150
>06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818
Length = 299
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 261 VDCWIEIDGTISGSDGGTPYSGSPVANLGIYSFK 160
V+C + D SD PYS +P+ + GIY+ +
Sbjct: 230 VECGAQEDCIYFISDYNRPYSANPLGDSGIYNMR 263
>01_01_0096 + 737928-739894,740164-740221
Length = 674
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 301 GPRALEDAN*GCPGELSAPSCCSQAVYSRAQDE 399
GPR + CP EL AP C+ A QD+
Sbjct: 160 GPRCPANITSQCPSELKAPGGCNSACNVFKQDK 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,742
Number of Sequences: 37544
Number of extensions: 369189
Number of successful extensions: 1071
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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