Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a05
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41946| Best HMM Match : L71 (HMM E-Value=3.8)                       29   2.3  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   2.3  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   4.0  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)              28   7.0  

>SB_41946| Best HMM Match : L71 (HMM E-Value=3.8)
          Length = 216

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 200 EYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRIKDVQVNSVHR 358
           E G PPS PL++P  +  + T   + T   +  TV  P   R  + Q+ S HR
Sbjct: 6   ERGCPPSPPLLIPEYTKARRTNS-SHTRRRNKRTVLAPPNSRRCEEQILSHHR 57


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 281  SSYSDVTVRGPSKMRIKD-VQVNSVHRRVVAKLYIPELKMKGNYKLSGQLLMLP--MNGE 451
            S + +   R PS    ++ V+V  +    +  L+ P   ++G + LSGQLL++P  + G+
Sbjct: 1347 SGHIEKETREPSPTTQEEPVEVEEIPPSRLTPLHFPRPHVRGCFTLSGQLLVIPPVLPGD 1406

Query: 452  G 454
            G
Sbjct: 1407 G 1407


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
 Frame = +2

Query: 89  NFINFGGFICPREEKALGKCLKDALNEYIPKLATGLPEYGVPPSEPL--IVPSISIQQST 262
           N+   G   C       G C   AL  Y     T LP YGVP ++ L  ++P I      
Sbjct: 410 NYNQLGPGFCVTPCSLQGYCTPQALRYY----TTTLP-YGVPANQDLLRLIPYIPPHLLA 464

Query: 263 GPITVTSSYSDVTVRGPSKMRIKDVQVNSVHRRVVAKLYIPELKMKGN 406
            PI     YS      P  +R   ++      R +  + + EL++  N
Sbjct: 465 QPIICDFRYSFSASTSPFGIRRNGIEAIVFSARPLDMIGMHELRVTAN 512


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +2

Query: 215 PSEPLIVPSISIQQSTGPITVTS----SYSDVTVRGPSKMRIKDVQVNSVHRRVVAKLYI 382
           P+EP+ +  +S ++   PI   +    SY D+          K + +  ++R       I
Sbjct: 55  PTEPICLRDVSPRRRHSPINRRAWGDKSYFDLIAEAIEPSPCKAMTIKDIYRWFSDN--I 112

Query: 383 PELKMKGNYKLSGQ 424
           PEL  +G+Y+L G+
Sbjct: 113 PELIERGDYQLEGR 126


>SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 317 KMRIKDVQVNSVHRR--VVAKLYIPELKMKGNYKLSGQLLMLPM 442
           ++ + DV V +++ R  V+    IP+  +KGNY L  Q L LP+
Sbjct: 137 ELALHDVIVVTINYRLGVLGFFNIPDTDVKGNYGLFDQSLALPV 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,323,250
Number of Sequences: 59808
Number of extensions: 412288
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)