Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a05
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    28   4.3  
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    28   4.3  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    28   5.7  
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ...    27   7.5  
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    27   10.0 
At3g04320.1 68416.m00457 trypsin and protease inhibitor family p...    27   10.0 

>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 271 HGYFVVL*CYGPRALED 321
           HG+FVV   YGPRA+ D
Sbjct: 144 HGHFVVFNVYGPRAVAD 160


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR class),
            putative domain signature NBS-LRR exists, suggestive of a
            disease resistance protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 110  FICPREEKALGKCLKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTG 265
            +ICP  E  +  CL+  + +  P L    PE G+P S  + +    ++  +G
Sbjct: 856  WICPELEDGIFPCLQKLIIQRCPSLRKKFPE-GLPSSTEVTISDCPLRAVSG 906


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1011

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 510 RPNIIVTVASISPYFAVNCPSPFIGNMRSCPDNL*LPFILSSGIYSLATTRRCTEFTWTS 331
           R NI++ VAS+  Y  V+C  P I +    P N+ L   L++ +      R   +F   S
Sbjct: 814 RLNIVIDVASVLDYLHVHCHEP-IAHCDLKPSNVLLEDDLTAHVSDFGLARLLLKFDKES 872

Query: 330 LI 325
            +
Sbjct: 873 FL 874


>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 754

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 209 VPPSEPLIVPSISIQQSTGPITVTSSYSDVTVRGPS 316
           +PP   L  PSISI   +G +TVT + + V   G S
Sbjct: 642 IPPGYNLNYPSISIPYLSGTVTVTRTVTCVGRTGNS 677


>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 188 TGLPEYGVPPSEPLIVPS 241
           TG P   +PPS+PLI PS
Sbjct: 240 TGRPMQSMPPSQPLINPS 257


>At3g04320.1 68416.m00457 trypsin and protease inhibitor family
           protein / Kunitz family protein weak similarity to
           Kunitz trypsin inhibitor TI1 [Populus tremuloides]
           GI:13605350; contains Pfam profile PF00197: Trypsin and
           protease inhibitor
          Length = 244

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 164 NEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVRGPSKMRIKDV 337
           N +I ++  G  +    P +PL+V   ++   T  + V ++ SDV VR  +K++IK V
Sbjct: 95  NMWICRMQYGSTDPNSCPQQPLMVTHPNLAAPTPVMFVLANKSDV-VRESAKLKIKFV 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,553
Number of Sequences: 28952
Number of extensions: 290758
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)