Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a04
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.2  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.2  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   4.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    26   5.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.4  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +2

Query: 503 DLSIKNL--QFLSSY--QALADLANFISSMKQKFRLNEKVKWI 619
           DLS K L   F +++    LA+ +N ++ +K K  +NEK+K I
Sbjct: 855 DLSNKELLYDFFNNHILGILAEFSNILNDLKGKTSINEKIKTI 897


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 281 SNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADA 400
           +N SD+R++ +R     +F +F +    FL  GG  P  +
Sbjct: 94  TNVSDVRSYDERNQKKSAFENFVSSMSSFLTGGGSSPTSS 133


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 473 RFYGESHPTL-DLSIKNLQ-FLSSYQALADLANFISSMKQKFRLNEKV 610
           + +GE   ++ D+S+K  + FLS   AL  L  F+SS  Q+ R +  +
Sbjct: 153 QLFGEDKASMFDISVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSI 200


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 334 TVIYIIALFPSSKIGWI*VV*LLLKPLWRW 245
           TV+Y+++LF S+  GW   V L+L  L  W
Sbjct: 268 TVLYLMSLFFSTSGGWTEKVALILWSLLVW 297


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 419 TWINYAKKFNALCINLEHRFYGESHPTLDLSIKNLQFL 532
           T+ + +K +++  +N E   YG+SH  LDL  +   F+
Sbjct: 219 TYYDPSKTYSS--VNFEEIEYGKSHEKLDLPYRTTDFI 254


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 173 KKFHLGRSNGGNLGIPGGDYQ-SNLPPPQWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFK 349
           K  H   SNG N       ++  N  PP W +++L  S+  +L   ++   +ND   + K
Sbjct: 19  KNQHTVPSNGQNAFSKVNVFRPENGRPPIWVQRRLKRSDLDNLLPNRRMKDINDDLKNAK 78

Query: 350 NQGP 361
            Q P
Sbjct: 79  PQWP 82


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +2

Query: 290 SDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADA--RWMVTGTWINYAKKFNALCIN 463
           SDL T  QR YV   F  F   GP+   I G+    +   W  T  WIN    + A  I 
Sbjct: 221 SDLFTPVQRTYVLPGFCTFPYLGPIIGPIIGDFITQSYLEWRWT-FWINMI--WAAAVIV 277

Query: 464 LEHRFYGESHPTLDLSIK 517
               F+ E+H    L  K
Sbjct: 278 FVFIFFPETHEDTILDYK 295


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 269 FA*TTVEVANLIDNHHQVFLNYHHYYGPNEIFL 171
           F+ T  E  N I+ + ++ +N H Y  P E FL
Sbjct: 57  FSLTENEENNEIETNEEMHVNSHDYAFPQEFFL 89


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 281 SGLTFA*TTVEVANLIDNHHQVFLNYHHY 195
           SGLT A +  +  NL +N  +++ +Y HY
Sbjct: 378 SGLTSAKSLGDAQNLCENAVRLYSSYKHY 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,373
Number of Sequences: 5004
Number of extensions: 60224
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)