Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a04
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 96 2e-20
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 89 3e-18
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 63 2e-10
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 54 8e-08
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639... 30 1.4
01_06_1152 + 34939884-34941824 28 5.8
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 7.7
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 96.3 bits (229), Expect = 2e-20
Identities = 59/145 (40%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Frame = +2
Query: 254 QWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFK-NQGPVFLMIGGEGPADARWMVTGTWIN 430
+W Q+LDH +P+D R +KQRYY F D+ GPVFL I GE + + ++
Sbjct: 53 RWMDQRLDHFSPTDHRQFKQRYY---EFADYHAGGGPVFLRICGESSCNG---IPNDYLA 106
Query: 431 Y-AKKFNALCINLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANFISSMKQ--KFRLN 601
+KKF A + EHR+YG+S P L+ +NL+FLSS QAL DL F ++ R N
Sbjct: 107 VLSKKFGAAVVTPEHRYYGKSSPFESLTTENLRFLSSKQALFDLVAFRQHYQEILNARYN 166
Query: 602 EKV----KWIAFGGSYPGSLAAWLR 664
W FG SY G+L+AW R
Sbjct: 167 RSSGFDNPWFVFGVSYSGALSAWFR 191
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Frame = +2
Query: 290 SDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINY-AKKFNALCINL 466
+D R +KQRYY +Y +GP+FL I GE + + +++ AKKF A ++
Sbjct: 84 ADHRQFKQRYYEFLDYYRAP-KGPIFLYICGESSCNG---IPNSYLAVMAKKFGAAVVSP 139
Query: 467 EHRFYGESHPTLDLSIKNLQFLSSYQALADLANF----ISSMKQKF-RLNEKVKWIAFGG 631
EHR+YG+S P L+ +NL+FLSS QAL DLA F ++ K+ R W FGG
Sbjct: 140 EHRYYGKSSPFESLTTENLRFLSSKQALFDLAVFRQYYQETLNAKYNRSGADSSWFVFGG 199
Query: 632 SYPGSLAAWLR 664
SY G+L+AW R
Sbjct: 200 SYAGALSAWFR 210
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 62.9 bits (146), Expect = 2e-10
Identities = 50/141 (35%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Frame = +2
Query: 257 WFKQKLDHSN--PSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWIN 430
+F Q+LDH P+ + Q+Y VND+F+ GE PA ++ TG +
Sbjct: 86 YFPQELDHFTFTPNASAVFYQKYLVNDTFWRRS-------AAAGETPAGPIFVYTGNEGD 138
Query: 431 YAKKFNALCINLEHRFYGESHP---TLDLSIKNLQFLSSYQALADLANFISSMKQKFRLN 601
K +HRFYGES P + S + L +L+S QALAD A I+S+K
Sbjct: 139 IECK--------QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITSLKHNLSAV 190
Query: 602 EKVKWIAFGGSYPGSLAAWLR 664
+ FGGSY G LA+W R
Sbjct: 191 SSPV-VVFGGSYGGMLASWFR 210
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Frame = +2
Query: 461 NLEHRFYGESHP--TLDLSIKN---LQFLSSYQALADLANFISSMKQKFRLNEKVKWIAF 625
+L+HR+YGES P + D + N L +L++ QALAD A ++ +K+ +E + F
Sbjct: 158 SLQHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYAVLLTDLKKNLS-SEGSPVVLF 216
Query: 626 GGSYPGSLAAWLR 664
GGSY G LAAW+R
Sbjct: 217 GGSYGGMLAAWMR 229
>07_02_0006 -
11663297-11663308,11663587-11663783,11663860-11663948,
11664087-11664166,11664747-11664851,11664951-11665031,
11665135-11665218,11665352-11665449,11666203-11666297,
11666380-11666453,11666549-11666826,11666920-11667190
Length = 487
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +2
Query: 359 PVFLMIGGEGPADARWMVTGTWINYAKKFNALCINLEHRFYGESHPTLDLSIKNLQFLSS 538
P ++ G GP+ A W + W +K N + + E + G++ LD ++K L + S
Sbjct: 193 PAKVLDFGAGPSSALWAMRAVWPKSIEKVNLVEPSKEMQRAGKN--LLD-NLKGLPLIHS 249
Query: 539 YQALADLANFISSMKQKFRL 598
Y ++ +L I +++ L
Sbjct: 250 YDSIQELNRNIEKHERRHDL 269
>01_06_1152 + 34939884-34941824
Length = 646
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +2
Query: 110 NMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQKLDHSNP 289
N+ Y ++ N+Y +DGV K G PG Y + F DHS+P
Sbjct: 475 NVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMAD-DHSHP 533
Query: 290 SDLRTWK 310
R ++
Sbjct: 534 QARRIYE 540
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 479 YGESHPTLDLSIKNLQFLSSYQALADLANFISSMKQ 586
YG S T+D ++K LQ + A A+L +F +S+++
Sbjct: 1484 YGASKLTVDSAVKYLQLANKLFAQAELYHFCASIQE 1519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,973,633
Number of Sequences: 37544
Number of extensions: 367368
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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