Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a04
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                183   1e-46
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)              119   2e-27
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)        103   1e-22
SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-06
SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)                   30   1.9  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   3.4  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   29   3.4  
SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)                    28   7.9  

>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score =  183 bits (446), Expect = 1e-46
 Identities = 91/189 (48%), Positives = 121/189 (64%), Gaps = 1/189 (0%)
 Frame = +2

Query: 101 MSTNMKLYTILFN-LYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQKLD 277
           M +N++ +   F  L+ A    + V+  +LGR  GG L  P      + PP  WF Q+LD
Sbjct: 33  MRSNIQQFLFFFTFLFTAFYEGEAVR-LYLGRPKGGMLQAPKIPLGFSAPPENWFIQRLD 91

Query: 278 HSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYAKKFNALC 457
           H + S+  TWKQR+Y ND+F   K+  PVFLM+GGEG     W++ G  + YA+ F A+ 
Sbjct: 92  HFDDSNTETWKQRFYYNDTFRKTKDS-PVFLMVGGEGAISPVWVLIGNMMKYAEGFGAMA 150

Query: 458 INLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGGSY 637
             LEHRFYG+SHP  D+S  NL++L+S QALADLA F  +M  KF L +  KWI+FGGSY
Sbjct: 151 FILEHRFYGQSHPRSDMSDANLKYLNSEQALADLAAFRQAMSVKFNLTDS-KWISFGGSY 209

Query: 638 PGSLAAWLR 664
           PGSL+AWLR
Sbjct: 210 PGSLSAWLR 218


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score =  119 bits (287), Expect = 2e-27
 Identities = 61/136 (44%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
 Frame = +2

Query: 260 FKQKLDHSNPSDL-RTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYA 436
           F+Q +DH   +   RT+ QRY++N +F+   + GPV L +GGE      + + G  ++ A
Sbjct: 117 FEQYIDHFEFTPRPRTYLQRYWMNRAFWKGPD-GPVLLYVGGESVLSGGY-IAGHIVDIA 174

Query: 437 KKFNALCINLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVKW 616
           K++ AL   +EHR+YG+S+    L  KN+++LSS  ALADLA F++  K KF L +K KW
Sbjct: 175 KEYGALLFAVEHRYYGKSNFFGCLKTKNMRYLSSQLALADLAQFVAHAKNKFGLTDKNKW 234

Query: 617 IAFGGSYPGSLAAWLR 664
           I +GGSYPGSL+AW R
Sbjct: 235 ITYGGSYPGSLSAWFR 250


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score =  103 bits (248), Expect = 1e-22
 Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
 Frame = +2

Query: 260 FKQKLDHSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYAK 439
           F+Q +DH N     T+KQRY   + ++D K  GP+F   G EG     W  +G     AK
Sbjct: 29  FEQTVDHFNFIQSGTFKQRYLYTEKYWDGK--GPIFFYSGNEGGITGFWENSGFVFEAAK 86

Query: 440 KFNALCINLEHRFYGESHP--TLDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVK 613
            F+AL I  EHR+YGES P       I+N+ +LS  QALAD A  I ++K++F+  EK  
Sbjct: 87  NFSALVIFGEHRYYGESLPFGQDSFKIENIGYLSIEQALADFATLIPALKKQFKAEEK-P 145

Query: 614 WIAFGGSYPGSLAAWLR 664
            ++FGGSY G L+A+LR
Sbjct: 146 VVSFGGSYGGMLSAYLR 162


>SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 42.3 bits (95), Expect(2) = 2e-06
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +2

Query: 254 QWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINY 433
           ++F QKLDH N     T+ QRY VN    +++  GP+F   G EG  D  W    T   Y
Sbjct: 52  KYFTQKLDHFNFRTSATFSQRYLVN--IANWRKGGPIFFYTGNEG--DITWFANNTSPKY 107



 Score = 27.1 bits (57), Expect(2) = 2e-06
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 509 SIKNLQFLSSYQALADLANFISSMKQK 589
           S K L +LSS QALAD A  I  +K K
Sbjct: 104 SPKYLGYLSSEQALADFATLIRHIKVK 130


>SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 422 WINYAKKFNALCINLEHRFYGESHP 496
           W N AK+F A+ +  EHR+YGE+ P
Sbjct: 4   WDN-AKEFGAMLVFAEHRYYGETLP 27


>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
          Length = 628

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 236 SNLPPPQWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFKN 352
           +NL   QW KQ   H  P+ +RT+  R   + +  D+K+
Sbjct: 167 ANLDCKQWSKQTFKHKGPTHIRTFVHRNVDDAAKQDYKD 205


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +2

Query: 92   SNQMSTNMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQK 271
            S   +T  ++Y ++  +  +  +  G  KF +G  N G+      D+  +LP  + FK +
Sbjct: 1162 SADSATPEQIYVLMKEIIKSFTTKFGTSKFRVGVVNAGSSPTRVFDFSDSLPDKESFKNE 1221

Query: 272  LD 277
            ++
Sbjct: 1222 IE 1223


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +2

Query: 92   SNQMSTNMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQK 271
            S   +T  ++Y ++  +  +  +  G  KF +G  N G+      D+  +LP  + FK +
Sbjct: 904  SADSATPEQIYVLMKEIIKSFTTKFGTSKFRVGVVNAGSSPTRVFDFSDSLPDKESFKNE 963

Query: 272  LD 277
            ++
Sbjct: 964  IE 965


>SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 470 HRFYGESHPTLDLSIKNLQ-FLSSYQALAD 556
           HR +G   P  D + +NL+ FL  YQA A+
Sbjct: 214 HRVFGVHDPNNDFAARNLEFFLQEYQAKAN 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,177,102
Number of Sequences: 59808
Number of extensions: 411247
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)