Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a03
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   153   1e-37
At5g19130.2 68418.m02277 GPI transamidase component family prote...    28   4.9  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    28   4.9  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  153 bits (371), Expect = 1e-37
 Identities = 87/221 (39%), Positives = 110/221 (49%), Gaps = 2/221 (0%)
 Frame = +1

Query: 10  NNNHPFHLVDYRP*PFTGAIGVLTLITGXXXXXXXXXXXXXXXXXXXXXXX--AYQ**RD 183
           +  H +HLVD  P P +G++G L    G                          +   RD
Sbjct: 4   SQRHSYHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMFVWWRD 63

Query: 184 ISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PPSR 363
           + RE T +G HT +V  G R G                    H  L+P +EIG I PP  
Sbjct: 64  VLRESTLEGHHTKVVQLGPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKG 123

Query: 364 ITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYE 543
           I   +P++IP LNT IL  SG  VT AHH+++     +    L  T+LL   FT  Q  E
Sbjct: 124 IEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGME 183

Query: 544 YIEASFTIADRIYGSXFFIATGFHGIHVIIGTLFLLICYIR 666
           Y +A FTI+D IYGS FF+ATGFHG HVIIGTLFL+IC IR
Sbjct: 184 YYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIR 224


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 529 LQAYEYIEASFTIADRIYGSXFFIATGFHG 618
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 529 LQAYEYIEASFTIADRIYGSXFFIATGFHG 618
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,779
Number of Sequences: 28952
Number of extensions: 147555
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)