Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a01
(303 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ... 105 4e-24
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 105 4e-24
At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)... 28 1.0
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai... 27 1.8
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 3.2
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 26 4.2
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 26 5.6
At3g05830.1 68416.m00654 expressed protein 26 5.6
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 25 7.4
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 25 7.4
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 25 7.4
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 25 7.4
At2g31940.1 68415.m03901 expressed protein 25 9.7
>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
EMBL:X69979
Length = 69
Score = 105 bits (253), Expect = 4e-24
Identities = 47/69 (68%), Positives = 62/69 (89%)
Frame = +1
Query: 61 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 240
MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60
Query: 241 PPGLQVKEV 267
PPGL V+++
Sbjct: 61 PPGLSVQDL 69
>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)
Length = 69
Score = 105 bits (253), Expect = 4e-24
Identities = 47/69 (68%), Positives = 62/69 (89%)
Frame = +1
Query: 61 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 240
MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60
Query: 241 PPGLQVKEV 267
PPGL V+++
Sbjct: 61 PPGLSVQDL 69
>At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)
EXL6 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana]
Length = 343
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 46 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 168
L V + ++KD KD+L K RR + K+K+ N F +
Sbjct: 125 LRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLI 165
>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 540
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 225 FLSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRF-GVFPPRLN 97
FL L+ VS+ G++ P L +L+ LLYFDR+ + P LN
Sbjct: 477 FLDLVRVSESYGLKFPREFAL---LLKQLLYFDRYTRLLAPNLN 517
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 73 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFL 186
+KDI L++ + S+ KK+ N++ K+R RF+
Sbjct: 531 MKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFI 568
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843 DIL
domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 100 KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 267
KA +DAK+ +I K N+ Y +I DKE A+ + PP +KEV
Sbjct: 911 KADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPP--IIKEV 964
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 73 IKDIKDFLIKARRKDAKSVKIKKN 144
+KD KD + K ++KD+ SV ++N
Sbjct: 670 LKDPKDLVAKFKKKDSSSVASERN 693
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 70 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDK 210
EIK+I+D + + + + +S +K +N FK+ S + LV+ K
Sbjct: 289 EIKEIRDLISEKQNLNNESWDKQKFWDNSGFKIVVSMSMLMLVVVSK 335
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 220 EKLKQSLPPGLQVKEVK*CN*VNEIKKK 303
+ +K PPG + VK C +NE K+K
Sbjct: 497 DSVKCECPPGFKGDGVKKCEDINECKEK 524
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 220 EKLKQSLPPGLQVKEVK*CN*VNEIKKK 303
+ +K PPG + VK C +NE K+K
Sbjct: 497 DSVKCECPPGFKGDGVKKCEDINECKEK 524
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 34 AG*KLFVFNMPREIKD 81
AG LF++N+PRE +D
Sbjct: 337 AGANLFIYNIPREFED 352
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 34 AG*KLFVFNMPREIKD 81
AG LF++N+PRE +D
Sbjct: 328 AGANLFIYNIPREFED 343
>At2g31940.1 68415.m03901 expressed protein
Length = 120
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 267 YFFNLETWR*TLLKFLSLLFVSDDQGV 187
Y F L LL L++ F+SDDQGV
Sbjct: 43 YQFKLALMASPLLLLLAVHFLSDDQGV 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,177
Number of Sequences: 28952
Number of extensions: 105033
Number of successful extensions: 288
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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