Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p21
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 72 1e-13
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 52 8e-08
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 46 6e-06
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 32 0.073
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 31 0.17
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 30 0.29
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 2.7
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 27 2.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.6
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 6.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 6.3
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 6.3
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 71.7 bits (168), Expect = 1e-13
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +1
Query: 523 LALNCVGGKSSLEMLRHLQHSGCMVTYGGMSRDPVSIPTSAFIFKNLSFFGFWMTAWNEK 702
L ++CV G+ + EM +++ M T+GGMSR P+ +P S IFKNL F GFW+T W +
Sbjct: 253 LGIDCVSGRVAAEMAKYMSKGATMATFGGMSRQPLPVPVSLLIFKNLKFHGFWVTKWKSE 312
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +1
Query: 292 LVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVK 447
+ YSE+G+P V++ VP +V VR LA+P+NP+DIN IQG YP K
Sbjct: 24 IAYSEYGNPKEVLRAVSYNVPKCSKNQVNVRFLASPINPSDINQIQGVYPSK 75
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 52.0 bits (119), Expect = 8e-08
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 289 YLVYSEFGDPLHVVKYRECQVPP-LGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCV 465
Y+V+ E +K E +VP L EVLV++ AA +N D+ +G YP+ + LP V
Sbjct: 5 YVVHDEISG-FDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVV 63
Query: 466 PGNEGVGIVEE 498
PG++G GI+E+
Sbjct: 64 PGSDGAGIIEK 74
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +1
Query: 295 VYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGN 474
V+ G P +V K+ E V G EVLV + V D++ +QG +P+ +P + G+
Sbjct: 11 VFHTHGGPENV-KFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGH 69
Query: 475 EGVGIV 492
EG G+V
Sbjct: 70 EGAGVV 75
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 32.3 bits (70), Expect = 0.073
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 316 PLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIVE 495
P + QV P EV ++++ + V D T+ GK P + P + G+EG GIVE
Sbjct: 21 PAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL-FPVILGHEGAGIVE 79
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 31.1 bits (67), Expect = 0.17
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Frame = +1
Query: 295 VYSEFGDPLHVVKYRE-CQVP---PLGSQEVLVRMLAAPVNPAD---INTIQGKYPVKVN 453
+Y+ G P V+ + +P LG +VLV ++A +NP D +NT Q
Sbjct: 16 LYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKALFK 75
Query: 454 LPCVPGNEGVGIVEEEKKIDKPSLALNCVGGKSSLEMLRHLQHSGCMVTYGGMSRDPVSI 633
LP +PG + G V K A V G S Q C +D +
Sbjct: 76 LPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGR-QGGSCATHIVTGDKDVWHL 134
Query: 634 PTSAFIFKNLSFFGFWMTAW 693
P + F +TAW
Sbjct: 135 PDGVSFNEGAGFGIAGLTAW 154
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 30.3 bits (65), Expect = 0.29
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 340 ECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIVE 495
+ QV P + EV V++ + V D T+ G P P V G+EG GIVE
Sbjct: 26 DIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGA-FPIVLGHEGAGIVE 76
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 331 KYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCV 465
KY + P L S +L P D +T+QGK V L CV
Sbjct: 117 KYADSDRPKLSSSSLLSLPDQKIPFPVDYSTVQGKQVVLTVLDCV 161
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 727 FHLFVLGQLFHSKQSSKI 674
FH F +GQ FH K S+++
Sbjct: 337 FHNFTVGQAFHQKNSNRV 354
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 400 VNPADINTIQGKYPVKVNLPCVPGNEGVGIVEEEKKIDKPSLALN 534
V P++ +Q + V ++ I EE+ KIDK +ALN
Sbjct: 1296 VRPSNSEKLQRPQQLSVAATSAVDSKTASISEEQAKIDKQKVALN 1340
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 419 FMSAGLTGAASMRTNTSWLPSGGTWHSLYFTTCNG 315
FM+ G + + R N SWL W T G
Sbjct: 357 FMNFGTSSDSFFRDNLSWLSKANNWSKFTATAALG 391
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 316 PLHVVKYRECQVPP-LGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNE 477
P H+ K + C +PP L S + L P P +T P + P P E
Sbjct: 144 PNHLTKTKSCSIPPILNSSDRSPLSLPTPY-PVQYSTQPVSLPQPIAAPAPPSAE 197
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 280 STVYLVYSEFGDPLHVVKYRECQV 351
+ ++ Y F DP H++K RE V
Sbjct: 74 TAAFVAYCRFSDPSHLLKAREISV 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,989
Number of Sequences: 5004
Number of extensions: 65833
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -