Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p21
         (727 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    25   2.4  
Y17690-1|CAA76815.1|   36|Anopheles gambiae gSG3 protein protein.      23   9.6  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     23   9.6  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 460 CVPGNEGVGIVEEEKKIDKPSLALNCVGGKSSLEMLRHLQHSG 588
           CVP N G  + +E K +   ++ +N  G +  ++ +RH Q  G
Sbjct: 38  CVPRNNGNWVTDESKTV---AIVVN--GNRLPIQRIRHRQTLG 75


>Y17690-1|CAA76815.1|   36|Anopheles gambiae gSG3 protein protein.
          Length = 36

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 428 CIVFMSAGLTGAASMRTNTSWLPSGG 351
           C++F++A     AS  T   +LP  G
Sbjct: 4   CLIFLAAATIAVASAATGPLFLPHFG 29


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 428 CIVFMSAGLTGAASMRTNTSWLPSGG 351
           C++F++A     AS  T   +LP  G
Sbjct: 4   CLIFLAAATIAVASAATGPLFLPHFG 29


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,577
Number of Sequences: 2352
Number of extensions: 17096
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)