Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p18
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)             170   8e-43
SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 29   2.7  
SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)                   29   3.6  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)                      29   3.6  
SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)                     29   3.6  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              28   8.4  

>SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score =  170 bits (414), Expect = 8e-43
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)
 Frame = +3

Query: 216 LELAQAEALDKDICLLVDEKDNFIGTATKRECH-KVGPDGDVLLHRAFSVFLFNKRGDMF 392
           L++ Q   L++  C+LVD  DN  G ATKRECH K       LLHRAFSVFLFN +GD+ 
Sbjct: 39  LDVTQRRLLEEQ-CILVDTDDNVQGCATKRECHLKENIVEQGLLHRAFSVFLFNSKGDLL 97

Query: 393 LQRRSSQKVTYPDYYTNACCSHPLYIDEKPEE-----IITAARRRMNHELGIPLDQLDPE 557
           +Q+R+  K+T+P  +TN+CCSHPLY++ + EE     +  AA+RR+ +ELGIP  ++  +
Sbjct: 98  IQQRADTKITFPGLFTNSCCSHPLYVESEMEENECLGVKRAAKRRLEYELGIPQKEVTLD 157

Query: 558 LFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEI 683
            F F+TR+HY    D +WGEHEID++LF Q DV + PN +E+
Sbjct: 158 DFQFLTRIHYKASSDKIWGEHEIDYVLFIQKDVTLAPNLNEV 199


>SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -2

Query: 641 EQYVVDLVFAPHSITRVVIVHAGHERKQFRVQLI*W--DSQFMVHPTSGCRYDFLGLLIY 468
           + +V+ L F   SI  ++    G     F   ++ W  +S + V P   C +  LG ++ 
Sbjct: 70  QSFVMGLFFFVQSIGSLL----GAALYSFAGHVLHWTTESFYTVGPHLDCYFFLLGAIML 125

Query: 467 VQWMAAASICVVIGICYFLA*SPLKE 390
           V W+    +C+  G+ +F    P  E
Sbjct: 126 VSWLVFVVVCIRSGLPFFQRSRPWAE 151


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 86  FSKIHTYENVGQKANKITVEHPKSREKIFGF 178
           F +IH     G +  KIT  HPK++ ++ GF
Sbjct: 760 FHRIHRVHREGFRHKKITPRHPKAQGQVEGF 790


>SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 697 KQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 602
           +Q  ++  E+G T  S +  S W  S  PH+P
Sbjct: 306 EQSEDVEEEYGATHASPYLESTWEWSVQPHSP 337


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 697 KQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 602
           +Q  ++  E+G T  S +  S W  S  PH+P
Sbjct: 370 EQSEDVEEEYGATHASPYLESTWEWSVQPHSP 401


>SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)
          Length = 556

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 183 PVKPATLDKDGLELAQAEALDKDICLLVDEKDNFIG-TATKRECHK---VGPDGDVLLHR 350
           P    TL K        + +D+  CL +DE  N +    T+R  H+    GPD  + +  
Sbjct: 133 PTLKVTLPKIEAIYIFCDIVDRSQCLALDEPSNVLACLETRRRPHEKVVYGPDTPICVAA 192

Query: 351 AFSVFLFNKR 380
           +FS F+ + R
Sbjct: 193 SFSEFVSSIR 202


>SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)
          Length = 293

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 183 PVKPATLDKDGLELAQAEALDKDICLLVDEKDNFIG-TATKRECHK---VGPDGDVLLHR 350
           P    TL K        + +D+  CL +DE  N +    T+R  H+    GPD  + +  
Sbjct: 75  PTLKVTLPKIEAIYIFCDIVDRSQCLALDEPSNVLACLETRRRPHEKVVYGPDTPICVAA 134

Query: 351 AFSVFLFNKR 380
           +FS F+ + R
Sbjct: 135 SFSEFVSSIR 144


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 363 FLFNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEKPEEIITAARRRMNHELGIPLD 542
           F  ++R +      SS++V   +   N CC+H  +  E P+E + +    +N E  +  +
Sbjct: 380 FAHDRRKEKLYVLLSSREVLVFESDNNPCCAHQSWRAECPDEGVCSI-ALLNSEFALTEE 438

Query: 543 QLDPE 557
            LD E
Sbjct: 439 DLDLE 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,848,402
Number of Sequences: 59808
Number of extensions: 473664
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)