Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p18
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   102   2e-22
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   102   2e-22
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   3.2  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    27   9.8  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  102 bits (245), Expect = 2e-22
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
 Frame = +3

Query: 225 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 404
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 405 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 575
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 576 RVHYH-DPGDGVWGEHEIDHILFFQ 647
           +  Y  +  +  WGEHE+D+ L  +
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILR 164


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  102 bits (245), Expect = 2e-22
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
 Frame = +3

Query: 225 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 404
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 405 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 575
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 576 RVHYH-DPGDGVWGEHEIDHILFFQ 647
           +  Y  +  +  WGEHE+D+ L  +
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILR 164


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 199 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM 98
           + GFTG    NLF  L  LHS+ +  + NI +C+
Sbjct: 17  IVGFTG----NLFMVLVTLHSNKLRSICNILICV 46


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 151 RVLHSDL--VSFLTNIFVCMNFTELHFYI 71
           R+  SD+  + F T I +C+NF + HF I
Sbjct: 68  RIRRSDINSIKFQTKILICLNFRKGHFLI 96


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 99  IHTKMLVRK-LTRSLWSTLRVEKRFLASEPVKPATLDKDGLELAQAEALDKDI 254
           + +K L  K L + +   +R  ++ +A++ V+P TL+KD     ++E+ +K +
Sbjct: 451 VESKSLESKSLDKEVEPKVRTARKSMAAKSVEPKTLEKDAEPSRKSESPEKTV 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,231,007
Number of Sequences: 27780
Number of extensions: 356506
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)