Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p18
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 390 FLQRRSSQKVTYPDYYTNACCSHPLYIDEKP 482
           +L+    QK  YP YY     S+ L   ++P
Sbjct: 281 YLEEFDWQKPFYPGYYPTMTYSNGLPFPQRP 311


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 558 LFTFMTRVHYHDPGDGVWGE 617
           LF+F+  + Y  P   +WG+
Sbjct: 150 LFSFLNTIVYCVPAGWIWGD 169


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 95  IHTYENVGQKANKITVEHPKSREKIFGFRTCETCYSR*GWSGISPGRSFR 244
           I   EN  +   K  +     R +   F+   +C+SR   S    G S+R
Sbjct: 197 IEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYR 246


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 467 VQWMAAASICVVIGICYF 414
           ++W  A ++ VV  +CYF
Sbjct: 205 IRWELAGTLAVVWIMCYF 222


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 467 VQWMAAASICVVIGICYF 414
           ++W  A ++ VV  +CYF
Sbjct: 258 IRWELAGTLAVVWIMCYF 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,056
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)