BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11p18 (699 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase... 155 2e-38 At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase... 152 2e-37 At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 33 0.18 At2g03610.1 68415.m00321 F-box family protein contains F-box dom... 33 0.24 At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 30 1.3 At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 29 3.0 At5g47390.1 68418.m05840 myb family transcription factor contain... 28 5.2 At4g10470.1 68417.m01719 expressed protein 28 5.2 At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 5.2 At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 28 6.8 At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c... 27 9.0 >At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I / isopentenyl diphosphate:dimethylallyl diphosphate isomerase I (IPP1) identical to SP|Q38929 Length = 233 Score = 155 bits (377), Expect = 2e-38 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 6/165 (3%) Frame = +3 Query: 213 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 389 G++ Q + +D C+LVDE D +G TK CH + + + LLHRAFSVFLFN + ++ Sbjct: 8 GMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYEL 67 Query: 390 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 554 LQ+RS KVT+P +TN CCSHPLY I+E + AA+R++ ELGI + + Sbjct: 68 LLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPV 127 Query: 555 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISE 689 + FT + R+ Y P DG WGEHE+D++LF DVK++PN DE++E Sbjct: 128 DEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAE 172 >At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II / isopentenyl diphosphate:dimethylallyl diphosphate isomerase II (IPP2) identical to isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP2) GB:U49259 [Arabidopsis thaliana] Length = 284 Score = 152 bits (368), Expect = 2e-37 Identities = 74/165 (44%), Positives = 106/165 (64%), Gaps = 6/165 (3%) Frame = +3 Query: 213 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKV-GPDGDVLLHRAFSVFLFNKRGDM 389 G++ Q + +D C+LVDE D +G +K CH + + LLHRAFSVFLFN + ++ Sbjct: 59 GMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYEL 118 Query: 390 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 554 LQ+RS+ KVT+P +TN CCSHPLY I + + AA+R++ ELGI + + Sbjct: 119 LLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPV 178 Query: 555 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISE 689 + FT + R+ Y P DG WGEHE+D++LF DVKV+PN DE++E Sbjct: 179 DEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAE 223 >At3g28570.1 68416.m03567 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 451 Score = 33.1 bits (72), Expect = 0.18 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Frame = +3 Query: 30 NEDLGIHCYLYYIVM*KCNSVKFIHTKMLVRKLTRSL-WSTLRVEKRFLASEPVKPATLD 206 N D+ YL Y+V + S+K K++V SL W T ++ + +E PAT D Sbjct: 145 NWDVVTGSYLRYVVE-EGKSIKARKKKVMVLMNNPSLNWKT-SMKGLWTCTEFEHPATFD 202 Query: 207 KDGLELAQAEALDKDICLLVDEKDNF--IGTATKRECHKVGPDG 332 +++ + + + +D+ D K+ + IG A KR GP G Sbjct: 203 TLAMDIDKKDEIFRDLVAFRDGKEYYDRIGKAWKRGYLLYGPPG 246 >At2g03610.1 68415.m00321 F-box family protein contains F-box domain Pfam:PF00646 Length = 216 Score = 32.7 bits (71), Expect = 0.24 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +3 Query: 438 TNACCSHPLYIDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVWGE 617 TN +HP DEKP+E I R+ + E G ++++ R HD GDG+ Sbjct: 108 TNPYSNHPFRFDEKPQEYIW-KRKIVIAESGEMMNEMLIFGHGVTMRAQVHDVGDGI--- 163 Query: 618 HEIDHILFFQSDV 656 + D I F + D+ Sbjct: 164 -KRDSICFVEDDL 175 >At5g12970.1 68418.m01487 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain Length = 769 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +2 Query: 14 VKLLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 169 + LL+ R R T LF+L+C + + ++ V A + HP+ R K+ Sbjct: 699 LSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKL 750 >At5g06850.1 68418.m00774 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain Length = 669 Score = 29.1 bits (62), Expect = 3.0 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +2 Query: 20 LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 169 LL+ R R T LF+++C V + ++ + + HPK R K+ Sbjct: 601 LLSWRDPRATCLFVIFCLVAAMILYVTPFKIIALAGGMFWMRHPKFRSKM 650 >At5g47390.1 68418.m05840 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 365 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 483 RASHLCTVDGCSKHLCSNRDMLLFGLISSEGTYHLSC*RG 364 R SH C +G + C NR + LFG+ +EG+ S G Sbjct: 4 RCSH-CNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMG 42 >At4g10470.1 68417.m01719 expressed protein Length = 388 Score = 28.3 bits (60), Expect = 5.2 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +3 Query: 591 DPGDGVWGEHEIDHILFFQSDVKVKPNSD 677 DP D +W + D D K+ PN D Sbjct: 29 DPEDSLWSDFTFDFSFLTSEDHKISPNDD 57 >At1g51570.1 68414.m05804 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain Length = 776 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +2 Query: 20 LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 169 LL+ R R T LF+L+C + I ++ V + HP+ R K+ Sbjct: 708 LLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKL 757 >At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical to heat shock protein 101 GI:6715468 GB:AAF26423 from [Arabidopsis thaliana] Length = 911 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 429 DYYTNACCSHPLYIDEKPEEIITAARRRMNHELGIPLDQLDPE 557 D AC + + +D +PEEI R+RM +L I L L+ E Sbjct: 393 DLVDEACANVRVQLDSQPEEIDNLERKRM--QLEIELHALERE 433 >At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein contains Pfam profiles PF02446: 4-alpha-glucanotransferase, PF00686: Starch binding domain; contains a non-consensus AT-AC intron between at intron 5 Length = 955 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +3 Query: 528 GIPLDQLDPELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDE 680 GIP Q PE+ F+ R H P +W + ++ + + +P ++E Sbjct: 837 GIPPSQCIPEITHFILRQHVEAP--SMWAIFPLQDMMALKEEYTTRPATEE 885 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,253,958 Number of Sequences: 28952 Number of extensions: 326607 Number of successful extensions: 831 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 827 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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