Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p15
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E053 Cluster: Chromosome undetermined scaffold_71, wh...    33   5.4  
UniRef50_A7IWT2 Cluster: Putative uncharacterized protein b407R;...    33   9.4  
UniRef50_Q7NCW8 Cluster: Gll2858 protein; n=6; Bacteria|Rep: Gll...    33   9.4  

>UniRef50_A0E053 Cluster: Chromosome undetermined scaffold_71, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_71,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 328

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -3

Query: 191 YET*EPDFFWAEIYSTFVC*TYYTKLLTVT-----QDTPAIHFKYRETQINR 51
           Y+T   D F A +YS+FVC   Y+K+ T +     ++TP + F + +  +N+
Sbjct: 20  YDTGMVDDFQAYVYSSFVCKNGYSKIATKSFSNQFENTPQVFFVHEQFDLNK 71


>UniRef50_A7IWT2 Cluster: Putative uncharacterized protein b407R;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           b407R - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 319

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 545 RVAQEYNFTNSR--AWHAIRRALIVLRGAQVSKTHRSRLSSFSATHL 411
           RV  E N    R  A+HAIR +L+V RG + S   RS +SS S T L
Sbjct: 275 RVPSELNSHTGRCIAYHAIRTSLVVFRGRKTST--RSSVSSKSTTSL 319


>UniRef50_Q7NCW8 Cluster: Gll2858 protein; n=6; Bacteria|Rep:
           Gll2858 protein - Gloeobacter violaceus
          Length = 268

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 552 VPTSSAGIQFHKQQSLACHKEGVNSSSRCPGIEDTPFKTEL 430
           + T  A +   K  +L  ++ GV  ++ CPGI DTPF+  +
Sbjct: 174 IATKHAVLGMTKSAALEWYRRGVRVNAICPGIIDTPFQDRI 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,380,301
Number of Sequences: 1657284
Number of extensions: 13368894
Number of successful extensions: 29169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29167
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)