Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p15
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.88 
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.2  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   8.2  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 524 NCIPALLVGTISKSDNNNEYDMHSFNAI----LDAIPGTSKAKDEESRKVDY 667
           NC+  +LV   S+  N N  D ++F  I    L  +   ++  D  SR V+Y
Sbjct: 828 NCLANILVDVASRLSNENSPDSYAFQEIFFESLGMLLPVTEVSDNTSRGVEY 879


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 450 CLRYLGTSKNY*RPPYGMPGSAVCEIVFLRYSWELYRSQTTITNMICTLLTPSLMQYL 623
           CLRYLG SK+       MP     +I F+ Y + L    ++  N+  T   P   Q L
Sbjct: 37  CLRYLGYSKSMCHEK--MP--IFMDIAFIEYCFNLSLDPSSFQNLPITQTQPDSQQIL 90


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 564 QTTITNMICTLLTPSLMQYLEHQR 635
           +T+I+ ++C+ LTPS  +  +HQ+
Sbjct: 100 KTSISYLVCSFLTPSKARQWKHQK 123


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 539  LLVGTISKSDNNNEYDMHSFNAILDAIPGTSKAKDEESRKVD 664
            LL+    K  N NEY   + N+ +  +PG+S      ++ ++
Sbjct: 1419 LLLDVTKKRSNVNEYTSGNNNSPVTKVPGSSSTSSSSTQPIN 1460


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 359  CGRNGSSLI*GVKRTVPI-DAWLRRSSVL---NGVSSIPGHLEELLTPSL 496
            CG+ GSSL  G K+ + I  A +R   +L      S++  H E+++  +L
Sbjct: 1252 CGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEAL 1301


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 528 QFHKQQSLACHKEGVNSSSRCPGIEDTPFKT 436
           Q HK+QSL   KE  ++SS   GI  TP  T
Sbjct: 75  QLHKEQSLKEDKESGSNSSESNGI--TPMGT 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,286
Number of Sequences: 5004
Number of extensions: 58507
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)